Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0192 ATGGCTATGACCAGCGTGCTCTGCATTGCCTTCATTATCTCTTTGACATGCATAGTTGAAGCTCGAATTCCAGGGGTTTACTCTGGCGGTGCCTGGGAAAGTGCTCACGCTACCTTCTACGGAGGATCCGATGCTTCCGGCACCATGGGGGGAGCGTGTGGGTATGGGAATCTGTACAGCCAAGGGTACGGAGTTAACACTGCGGCATTGAGCACAGCGCTTTTCAACAATGGATTTAGCTGCGGTGCGTGTTTTGAGTTGAAGTGTGCAAACGACAAGCAGTGGTGTCACTCTGGAAGTCCTTCCATTTTCATTACTGCAACTAACTTTTGCCCTCCTAACTATGCTCTTCCAAACGACAATGGCGGTTGGTGTAACCCTCCTCGTCCTCACTTCGACCTAGCCATGCCCATGTTCCTTAAAATTGCCGAATATCGTGCCGGCATCGTCCCTGTTGCCTATCGCCGGGTGCCATGCAGAAAGCGAGGAGGATTAAGGTTCACAATCAACGGATTCCGTTACTTCAACCTGGTGCTGATTAGCAACGTGGCCGGTGCAGGGGATATCGTGCGCTCGTACGTGAAGGGCACTCGAACCGGGTGGATGCCGATGAGCCGGAACTGGGGTCAGAACTGGCAGTCTTGGCAATTCGGTCAAACTTTCACCGGAAAGAATTTCCGAGTGTGA 687 0.5226 MAMTSVLCIAFIISLTCIVEARIPGVYSGGAWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFELKCANDKQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKRGGLRFTINGFRYFNLVLISNVAGAGDIVRSYVKGTRTGWMPMSRNWGQNWQSWQFGQTFTGKNFRV* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0192 228 PANTHER EXPANSIN-A15 4 214 IPR002963 GO:0009664
Apr3g0192 228 Pfam Lytic transglycolase 67 154 IPR009009 -
Apr3g0192 228 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Apr3g0192 228 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Apr3g0192 228 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Apr3g0192 228 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Apr3g0192 228 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Apr3g0192 228 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576
Apr3g0192 228 SMART dpbb_1 67 154 IPR007112 -
Apr3g0192 228 PANTHER EXPANSIN 4 214 - -
Apr3g0192 228 SUPERFAMILY PHL pollen allergen 163 222 IPR036749 -
Apr3g0192 228 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
Apr3g0192 228 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Apr3g0192 228 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Apr3g0192 228 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Apr3g0192 228 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Apr3g0192 228 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Apr3g0192 228 PRINTS Expansin signature 163 175 IPR002963 GO:0009664
Apr3g0192 228 PRINTS Expansin signature 175 196 IPR002963 GO:0009664
Apr3g0192 228 Pfam Expansin C-terminal domain 166 216 IPR007117 -
Apr3g0192 228 Gene3D - 165 226 IPR036749 -
Apr3g0192 228 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 228 IPR007117 -
Apr3g0192 228 Gene3D - 18 160 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0192 Apr-Chr3 3625771 3627704 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0192 1 228 Miscellaneous Gene Families AT2G28950 74.031 2.67e-139 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0192 - - gmx:100811296 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0192 3 3625771 3627704 Apr3g0192 3 3625771 3627704 ECH
Apr3g0192 3 3625771 3627704 Apr9g1341 9 23009635 23011717 ECH
Apr3g0192 3 3625771 3627704 Apr10g2025 10 33087615 33089347 ECH
Apr2g2300 2 27978586 27980438 Apr3g0192 3 3625771 3627704 ECH
Apr4g1898 4 26805047 26808522 Apr3g0192 3 3625771 3627704 ECH
Apr2g2300 2 27978586 27980438 Apr3g0192 3 3625771 3627704 PCT