Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0175 ATGGAACCTAGCTTGGATTTGAGTTTGAGCTTTGTTCCCAGAAACGTTTCTGATATTCTTGGCGATGTTCCTAAGAGCAAAGAAGGGTCTCAGAAAATTTCCACGCTTGCGGACTTTGTCAAAAGGTTGGAAGATGAGATGAGGAAGATTGAGGCTTTCAAACGTGAGCTTCCTCTTTGCATGATCCTCGTTACCGATGCTATTAGTAGATTGAAAGAGGAAATAAATGGGGGTGTGAGAATGCAAGATGAACCCGTGGTTGAAGAATTGATGACACTGGTGAAATTGAAAAGCAATTCTGGGGGAAATGGGTCTTTGACTATGGAGAAGGGAAACGGTGATAAGAAGAATTGGATGAGTTCTGTTCAGCTATGGAACGCTAAAACCAAACAGAGGAGTGAAGAGGATGATTGGTTTGTGCCAGAAAAGCCAATTCAAGCACAGGACGAGACCAACAAGTGTGGAGGAGCATCATCACTAGCATTGAATGGAAACAAGTGTGTGTTGAAGACAGAGATGAGGGATGACAAGGAGGTGTCAAAGGTTCCTAGCCTTAGTTTGATGACTCCAACGTTTGAACTGAAACATAGAACCTCAAGAGGTGGTTCGCCTCTGATTTCCAGAACGGTTGAGATTAAGGGTCAGTCTCAACCGCAGCAGAATCCAAGGAAGCAAAGACGATGCTGGTCACCAGAGCTTCATCGGCGATTTGTTGATGCGCTTCAACGATTAGGAGGACCACAAGTGGCCACTCCTAAACAGATTAGAGAACTGATGCAGGTGAGAGGCCTGACAAATGATGAAGTGAAAAGCCATTTGCAAAAGTACAGGCTTCATTTTAGAAGACCTCAAGTTTCTTCAGTTGGGAAGGCTAATAGTGGCTTAAGCATGATGGCAAAAGATCAATATGTAGATAAAAAATCAAAGGGAAACATATCACAATCTAGCTCTCCAGAAAGTCCTCTCTTTCTAGGAGGGTCTGGTAACAGCATGGACACAGAAGAAGATGAGCAATCAGATTGTCACAATTGGAAAGGTGGACTTCACCACCACCAAGAAGCTGATGTTCTGTGA 1074 0.4367 MEPSLDLSLSFVPRNVSDILGDVPKSKEGSQKISTLADFVKRLEDEMRKIEAFKRELPLCMILVTDAISRLKEEINGGVRMQDEPVVEELMTLVKLKSNSGGNGSLTMEKGNGDKKNWMSSVQLWNAKTKQRSEEDDWFVPEKPIQAQDETNKCGGASSLALNGNKCVLKTEMRDDKEVSKVPSLSLMTPTFELKHRTSRGGSPLISRTVEIKGQSQPQQNPRKQRRCWSPELHRRFVDALQRLGGPQVATPKQIRELMQVRGLTNDEVKSHLQKYRLHFRRPQVSSVGKANSGLSMMAKDQYVDKKSKGNISQSSSPESPLFLGGSGNSMDTEEDEQSDCHNWKGGLHHHQEADVL* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0175 357 MobiDBLite consensus disorder prediction 308 327 - -
Apr3g0175 357 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 355 - -
Apr3g0175 357 MobiDBLite consensus disorder prediction 335 357 - -
Apr3g0175 357 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 221 281 IPR017930 -
Apr3g0175 357 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 355 IPR044787 GO:0003700|GO:0006355
Apr3g0175 357 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 224 279 IPR006447 GO:0003677
Apr3g0175 357 MobiDBLite consensus disorder prediction 305 357 - -
Apr3g0175 357 Gene3D - 223 281 - -
Apr3g0175 357 Coils Coil 36 56 - -
Apr3g0175 357 Pfam Myb-like DNA-binding domain 226 277 IPR001005 -
Apr3g0175 357 SUPERFAMILY Homeodomain-like 222 282 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0175 Apr-Chr3 3152769 3155010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0175 4 280 G2-like Transcription Factor Family AT4G37180 39.716 4.67e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Apr3g0175 Myb_DNA-binding 1.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0175 - - gmx:100794220 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0175 3 3152769 3155010 Apr3g0175 3 3152769 3155010 ECH
Apr3g0175 3 3152769 3155010 Apr7g0939 7 16450485 16452432 PCT