Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0173 ATGTCGTCTCCGAATTCACCTTGCGCGGCGTGCAAGTCTCTACGGAGGAAGTGCACGCGGGAGTGCGTGTTCGCGCCGTATTTTCCACCAGACAACCCGCAACGGTTCGAGTGCGTGCACCGAGTGTTCGGGGCGAGCAACGTTACAAAACTGCTGAAAGAACTAAGCGCCACGCAGCGAGACGACGCCGTTAAGTCTCTGGCGTACGAGGCAGAGGCGCGTATAAGGGACCCCGTGTACGGGTGCGTGGGCTTCATCTCAGTGCTACAACACCGTCTCCGTCAAATCCAAACGGATCTGTACAACGCCAAGAAGGAATTAGCCAGCTACATTAGCCCCCAGGCAATGCAAGTTCTCTTGGCCAATCCTGGAATGTTATCATCCTCTGGTGTTCTCATGCCGCATTTGCATCAATCTGTTTTCAACAATTTTGGGGATAACAACGTGCCGCAACCCGTTTTGGTTGGTCATGGCGGTGGCCAGTTAATGATTCGTGACTCTCAGCAACAGGAGTTTCTACAAGCTCAGCAGTTAGCTGCAGATAGAGAGCAACAGCATCAGCATCCGTATCAGCAACAGGTTTTGCTTCGGAACTATGAGCAGCAAGAAGAGTTTATGAAGTTTAATAATGGGTTGGAGCATGTGGGTGTGTTCGGGAACCAGATGGGCGGGACTGGAGGTGAGTTGTCTCCTTCTTTGGCTCTTGGAACCTTCGAGAATGTTGCTCCTTATCAGATGCAACAGCAGCAACAAGGGGAACACCATGTTCCTCATTCTCACCTCCATCCAATTGAGGCGCAGCTTCTTCTCTCACCGCAGCACCAACATACACAGCAATCACAGCTACACTCTGAAATAACTGAGGATACTAGGAGTATTGGTCCCTCTTGA 891 0.5129 MSSPNSPCAACKSLRRKCTRECVFAPYFPPDNPQRFECVHRVFGASNVTKLLKELSATQRDDAVKSLAYEAEARIRDPVYGCVGFISVLQHRLRQIQTDLYNAKKELASYISPQAMQVLLANPGMLSSSGVLMPHLHQSVFNNFGDNNVPQPVLVGHGGGQLMIRDSQQQEFLQAQQLAADREQQHQHPYQQQVLLRNYEQQEEFMKFNNGLEHVGVFGNQMGGTGGELSPSLALGTFENVAPYQMQQQQQGEHHVPHSHLHPIEAQLLLSPQHQHTQQSQLHSEITEDTRSIGPS* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0173 296 MobiDBLite consensus disorder prediction 272 296 - -
Apr3g0173 296 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Apr3g0173 296 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 255 - -
Apr3g0173 296 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-RELATED 1 255 - -
Apr3g0173 296 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0173 Apr-Chr3 3135847 3136737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0173 1 236 AS2 family AT5G66870 47.170 9.96e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Apr3g0173 LOB 3.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0173 - - gmx:100796406 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0173 3 3135847 3136737 Apr3g0173 3 3135847 3136737 ECH
Apr7g0937 7 16429274 16432657 Apr3g0173 3 3135847 3136737 PCT