Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0146 ATGTCGCAGCGGTCGACGCCAGCGCCGTTTTTGACGAAGACGTATCAGTTAGTGGAGGATCCTGCCACCGACGACGTTATTTCGTGGAGCCAAACTGGCAATACTTTTGTCGTTTGGAAACACGCCGATTTCGCTAAGGATTTGCTTCCCAAGTACTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAGCTCAATACCTATGGATTTCGAAAGATCGTTCCTGACAAATGGGAATTCGCGAACGAGCATTTCAAGCGAGGACAGAAGGAGCTCCTCGTCGAAATCAAACGGCGGAAGACGGTGCCCCATTCCACTGCAGCGGGAAAATCCGTCGGCGGCAACATCTCGGCGTCGATCTCGGCGTCGAACTCGGGCGGCGACGACATGGGTTCGACGTCGACGGGATCGGTGGAGGGAACGACACAGTGCGCGGATTTATCGGGCGAGAACGAGAAATTGAAGAAAGACAACGAGAAATTGAGCTGTGAGCTGGCGCGCGCGAAGAAACAATGCGACGAACTCGTGGCCTTTCTGAGGAATTCTCTGAATGTGGGTCCCGATGTGATAAACCGCATCACTCGGCAAGGAACTTGTGGGTCCAGCCCCGATGCGGTGCGTTTTGATGCTAATGATGATGATGACGAAGAAAATGCGGTAGGTGAGTGTGAATCGAAAGGAGAGAGTTTGAAACTGTTTGGTGTTTGGTTGAAGGGCGAAGAAGAGAAAGAGAAATTGAATATTGCCGCCAATGGTAACTGCCGCAAGAGAGGGCGCGAAGAGTACCCAATCGGTGCTGGTGCCAAACAGTTGAAGACTCTTGTCTAG 828 0.5205 MSQRSTPAPFLTKTYQLVEDPATDDVISWSQTGNTFVVWKHADFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEHFKRGQKELLVEIKRRKTVPHSTAAGKSVGGNISASISASNSGGDDMGSTSTGSVEGTTQCADLSGENEKLKKDNEKLSCELARAKKQCDELVAFLRNSLNVGPDVINRITRQGTCGSSPDAVRFDANDDDDEENAVGECESKGESLKLFGVWLKGEEEKEKLNIAANGNCRKRGREEYPIGAGAKQLKTLV* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0146 275 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr3g0146 275 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr3g0146 275 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr3g0146 275 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr3g0146 275 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 247 IPR027725 -
Apr3g0146 275 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr3g0146 275 MobiDBLite consensus disorder prediction 120 141 - -
Apr3g0146 275 Coils Coil 144 171 - -
Apr3g0146 275 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 247 - -
Apr3g0146 275 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr3g0146 275 Gene3D - 2 101 IPR036388 -
Apr3g0146 275 MobiDBLite consensus disorder prediction 201 221 - -
Apr3g0146 275 SUPERFAMILY "Winged helix" DNA-binding domain 6 99 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0146 Apr-Chr3 2603756 2607213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0146 2 243 HSF AT4G36990 55.814 6.98e-83 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Apr3g0146 HSF_DNA-bind 2e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0146 K09419 - gmx:100801897 359.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0146 3 2603756 2607213 Apr3g0146 3 2603756 2607213 ECH
Apr7g0919 7 16221065 16223593 Apr3g0146 3 2603756 2607213 PCT