Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0139 ATGGATGTGGACATAGTGAAAACTTCGGCGAGTGACACCAGCAATATGGACATGATGGCAATGATGATGCAAATGGAAAAGTTCCCTGAATTCTGTGAACCTTTTTATTCCACCACTCCCACTTACCAAGAAAACGAGTTATTATTATCGAGTGGAACCGTTTCCACCCTATTCAACGTTAACCCAAATGTAGCTCCACCGACATTGATGGATGCACCACCGTCAAATGTTATCAACAACAGCAACAACCTTATCCAACAGCCTATGACACCACCTTTTCAAGTTCAACCACAGCCCAACACTTCATTCTCATCCTATCCATCATCATCATCGGATAGAAGAAACTCTATGGCGGCGATGAGGGAAATGATATTCCGAATTGCAGTGATGCAACCGATTCATATAGACCCTGAGTCTATAAAGCCACCAAAGCGAAGGAATGTGAAGATTTCCAAGGATCCGCAGAGTGTAGCAGCGAGGCACAGAAGGGAAAGGATAAGCGAGAGGATAAGGATTTTGCAGAGATTAGTTCCTGGTGGCACCAAAATGGACACTGCTTCGATGTTGGATGAAGCTATACACTACGTTAAGTTCTTGAAGAAACAGGTGCAGACACTGGAACAAGCAGGGGCAAATAGACCTCAAAATTCCGTTGGTTGTGTTGGTTTTCCTGGGGGGATGTCTAACTCCAATGTTAATTATTCTGGGCTGTTGATGAAGGGTTGCCAACCTTATCCAGTGTTGGGTTCTGCTTCTAAACAATTGCTCAGCTGA 774 0.4419 MDVDIVKTSASDTSNMDMMAMMMQMEKFPEFCEPFYSTTPTYQENELLLSSGTVSTLFNVNPNVAPPTLMDAPPSNVINNSNNLIQQPMTPPFQVQPQPNTSFSSYPSSSSDRRNSMAAMREMIFRIAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGANRPQNSVGCVGFPGGMSNSNVNYSGLLMKGCQPYPVLGSASKQLLS* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0139 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
Apr3g0139 257 MobiDBLite consensus disorder prediction 89 113 - -
Apr3g0139 257 Gene3D - 149 217 IPR036638 GO:0046983
Apr3g0139 257 Pfam Helix-loop-helix DNA-binding domain 159 199 IPR011598 GO:0046983
Apr3g0139 257 PANTHER TRANSCRIPTION FACTOR HEC2 1 245 - -
Apr3g0139 257 SMART finulus 156 205 IPR011598 GO:0046983
Apr3g0139 257 Coils Coil 189 209 - -
Apr3g0139 257 CDD bHLH_AtIND_like 151 207 - -
Apr3g0139 257 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 245 IPR045843 GO:0003700|GO:0006355
Apr3g0139 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 208 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0139 Apr-Chr3 2469634 2470407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0139 12 226 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 55.349 1.44e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr3g0139 HLH 1.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0139 - - gmx:100805427 283.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0139 3 2469634 2470407 Apr3g0139 3 2469634 2470407 ECH