Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0132 ATGAACCATGAAGGAGGCCAAAGTGGACAAGTTAATTCCGACAATGATAACATTGAAAACGGAGCCCATCCTCATCTATCAATTGAAATAGTGCAGAGACTATTTCCTTCTTCACGTCCCCTCATTGTGGAAAGTGATGACGGTTGCCCAGATATGCTCTCTAGGCTTGATATGAATCTCCCTCCTCCGAGTGACAATATTGTTCCAAACAACGGTTACAATATGCTCTCTAGGCTTGATATGAATCTCCCTCCTCCGAGTGACAATATTGTTCCAAACAACGGTTACAACTCCGGTGTTGCTCTTCATGAATCTGTTAATAGAGCATTGGAATTGAGCATTGCTCCTCCAAGTTCCCTTACTACGCCAATAAGTTGGCTTTCTGGATCAAATGTTCCTCAGTATCAAGATAATGAAGGGAATAATCCTCCCATCAATCTTGAATTGTCATTGAGCATAACCCAACCTCCAAGTGGAACACAAAATCAAGGTGCAAGGACATCATATGCTTCGAATGTAACTCACAATGTTGCTCCAGGGTCTGTAGTAGAAGAACAAGGCATGCGTAGTGGCATCTCAACAACCACTACACTTCTACCATCCAAGAGAACATTCAATGATCTTTCTTCTGGAGAATTTTTTGTAGGTGAAAGTTCAAGAATGGGTGCAGAAGCTGCATTATCCAAACGACACACTTCTACTTCTCACCCCATTGCCAGCAACGACATGAACACATCATTTCTAAATCTTGGGATGTCACTGCAACCCTTTAGTGAAGCTGCACAAACTCAAACCATTCCAAGTTATGTTAATCCACAGAACATAGAAACTAATACTCCTCCACAATCTTCTGTGGGTGCTAATATACATTCAAACAGTTACACAACAGGTATACAACCTCCATTGTCTGGCCAAACAACTATGTTAATCGAAACCCATAATGCTCCTTTATCTAATCACTCAGGAACTGTTGCAAATAGTTCATCACAGCGTGGAGTTGCTACTAATTTTCACCGAGTTGAGGGTGTTTACCCTACTTTTGAGTCCATGAGTGACGCAGGTCGAGGAATGAGCCCCCCTTATGTTCCAACTGGAACTGAAGTTATGGCGCCATTATATGGTCAAAGAAACATTCAAGAAAGCAGCATGGTTAGCTCTCCTGTTGGAACGACACCTCAACCTGGAAACTTGCCTGTTAGTGGAGCTGCAAGTCAAAGAAACATTCAAGAAAGCAGCATGGTTAGCTCTCCTGTTGGAACGACACCTCAACCTGGAAACTTGCCTGTTAGTGGAGCTGCAAGTCAAAGAAACATTCAAGAAAGCAGCATGGTTAGCTCTCCTGTTGGAACGACACCTCAACCTGGAAACTTGCCTGTTAGTGGAGCTGCAACCTTGGTTGGGAATATTCCCAACCTTTCTCAACAAACTGGTTCTTTGAACACTGCAGGTAATAATGTTAATTTTACAAATGCTCCTCCAAGGCTCCCTCAACAGTCAAATCCGAATGAATCCATGCAAATACCATCAAGAGCTGTGAATCCTCCTATGCGTAGAGTTCGTTCTCGTACCCGACCACTTGTTCATCCTTGGCGAAGTCGAAGATATAATGCACCATCATCTTCAAGCTCTTCAGAAAGCTCAGAAGAATTGAACCCTACAACAGAAATCAATTCTGGAACTGAGAATGAACAAAATTCAGGGGCATCAACTGCAATTCAATCTGGTAGCGTTGTTGGAGCCATTATTCCAGTACTAAGAGCTACTACTGATTCAAGAAGAATGCTTGCGTCTCGGGTCTGCTCTATCATGGATCATCTACGCACGGGTCGCACTATAGTGTTTGAGGGAACGATGGTCCTTGACTATTCAGTTATGATAGATTCAATGGAGCCGCAGAGGAACATACCGAGGAGAAACAATGTCGGAACCAATGGACTGACTGTCGAAGAGATCATGTTGCACCTTAGGCGTGAAAATTTCAACTTTGTTGGTGAACCGACTCCAGAAAATAAAGAATCATGTTGCATTTGTCAGGAGGAGTTTGTTGACGGAGAACAAGTTGGGCGGCTAGATTGTGTGCATAGGTTTCATGTTGAATGCATCAAAGAATGGCTCATGCACAAGAACGTTTGCCCGATCTGTAAACGAACAGCATTAGCTATGGATGCACCTAAAGATGAAGTTCCAGGAAATCAAGGTCAAGAAAATGCGAATGAAAATGCTGGTGATTAG 2232 0.4297 MNHEGGQSGQVNSDNDNIENGAHPHLSIEIVQRLFPSSRPLIVESDDGCPDMLSRLDMNLPPPSDNIVPNNGYNMLSRLDMNLPPPSDNIVPNNGYNSGVALHESVNRALELSIAPPSSLTTPISWLSGSNVPQYQDNEGNNPPINLELSLSITQPPSGTQNQGARTSYASNVTHNVAPGSVVEEQGMRSGISTTTTLLPSKRTFNDLSSGEFFVGESSRMGAEAALSKRHTSTSHPIASNDMNTSFLNLGMSLQPFSEAAQTQTIPSYVNPQNIETNTPPQSSVGANIHSNSYTTGIQPPLSGQTTMLIETHNAPLSNHSGTVANSSSQRGVATNFHRVEGVYPTFESMSDAGRGMSPPYVPTGTEVMAPLYGQRNIQESSMVSSPVGTTPQPGNLPVSGAASQRNIQESSMVSSPVGTTPQPGNLPVSGAASQRNIQESSMVSSPVGTTPQPGNLPVSGAATLVGNIPNLSQQTGSLNTAGNNVNFTNAPPRLPQQSNPNESMQIPSRAVNPPMRRVRSRTRPLVHPWRSRRYNAPSSSSSSESSEELNPTTEINSGTENEQNSGASTAIQSGSVVGAIIPVLRATTDSRRMLASRVCSIMDHLRTGRTIVFEGTMVLDYSVMIDSMEPQRNIPRRNNVGTNGLTVEEIMLHLRRENFNFVGEPTPENKESCCICQEEFVDGEQVGRLDCVHRFHVECIKEWLMHKNVCPICKRTALAMDAPKDEVPGNQGQENANENAGD* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0132 743 MobiDBLite consensus disorder prediction 474 571 - -
Apr3g0132 743 MobiDBLite consensus disorder prediction 1 20 - -
Apr3g0132 743 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 237 719 IPR045191 GO:0061630
Apr3g0132 743 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 655 720 IPR013083 -
Apr3g0132 743 SMART ring_2 674 714 IPR001841 -
Apr3g0132 743 SUPERFAMILY RING/U-box 670 719 - -
Apr3g0132 743 MobiDBLite consensus disorder prediction 534 571 - -
Apr3g0132 743 CDD RING-H2_TTC3 673 715 - -
Apr3g0132 743 MobiDBLite consensus disorder prediction 382 458 - -
Apr3g0132 743 MobiDBLite consensus disorder prediction 1 21 - -
Apr3g0132 743 MobiDBLite consensus disorder prediction 474 509 - -
Apr3g0132 743 MobiDBLite consensus disorder prediction 382 459 - -
Apr3g0132 743 Pfam Ring finger domain 673 715 IPR001841 -
Apr3g0132 743 ProSiteProfiles Zinc finger RING-type profile. 674 715 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0132 Apr-Chr3 2326349 2331236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0132 585 719 C3H Transcription Factor Family AT2G15530 34.177 6.71e-22 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0132 - - aprc:113858181 1487.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0132 3 2326349 2331236 Apr3g0132 3 2326349 2331236 ECH