Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0124 ATGTGGGATCTCAATGACTCACCCGATCAGAGGAAGGATGAAGAATCCGAAGGGTGTTCTTCCCTCAAAACTTCCATTGATGGGGATGATGATAATAACAAAGGTAAAAGGGTTGGATCTGTTTCCAATTCTAGCTCTTCCGCGGTGGTCATCGAGGATGGATCAGAAGAAGATGATGATGAAGAAGAAGAAGGTACCAGACGAAGCATGAAGAAAAGAAGCAGCAAGATATTTGGGTTCTCTGTGACCCAAGATGAAGAAGAGTACATGGACAGTGAGCACCCACCTGTTACTAGACAGTTTTTTCCAGTGGAAGAACCTGATGTGGCCGTTGCATCGGGTGGAGGAAGCTCTACCTTCCCTCGTGCTCACTGGGTTGGTGTGAAATTTTGTCAATCAGAAACACTCGGTGCTGGAAAATCAGTGGAAGTTTCGCAGCCTATGAAGAAGAGTAGAAGAGGACCAAGGTCAAGGAGTTCTCAGTATAGGGGAGTCACCTTTTACAGAAGAACAGGTCGATGGGAGTCTCATATATGGGATTGTGGAAAACAAGTGTATCTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCATATGATAGAGCGGCCATTAAGTTCCGAGGAGTAGAGGCCGACATAAACTTCAGCATAGAAGATTATGAAGACGACTTGAAGCAGATGAGCAATCTGACAAAGGAGGAGTTTGTGCACGTCCTTCGCCGACAAAGCACTGGATTTCCGAGAGGAAGCTCTAAATATAGAGGTGTAACTTTGCACAAGTGTGGAAGATGGGAGGCTCGGATGGGCCAATTTTTAGGAAAAAAGTACGTTTATCTGGGTCTGTTTGACACCGAGATTGAAGCTGCCAGAGCTTATGACAAAGCAGCAATAAAATGCAATGGCAAAGAGGCCGTCACCAATTTTGATCCCAGCATCTATGATAATGAGCTTAATTCCGAATCCACAGGTACTACTGCAGATCACAATCTGGATTTAAGTTTGGGCAATTCGAGTTCAAAGACTTGCAATAATCAAGCGTCGGGGAATCACACCACAAATGCTGCAACTCATGATCAACACCTGCAATCTGAGTCTAACTGGCGGAATGGGGGAAGCAAGCCTAAGCTGGTGAATATACTACCAAAACCATGCAATAGAAGCAACAAGGACGCACATGGAAGGGATGTGCACGGGGAGAGTGAAGCATTGCGGATGTTAAGTCAAACCCACCTTCATTCTCCAGCCTCTAATGAAATGCAAAGATATGGTCCCTACAGGTCTCCTGGAGGAGAGTCTCAAATGCTTCAAAATTTTGCACTCATTCACCCACCAAATTTTCATTTTCCCAGCAGCAGCATTGGAGGCCGTATTGGAAGTGATCTTTCATTATCAATGGCCGATCAACAACAGTGGCAATCCGGGCCTCCACATTATTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCACAGATAAGACCCTCTTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACACTCTCATGAGACCCTCTTGA 1542 0.4578 MWDLNDSPDQRKDEESEGCSSLKTSIDGDDDNNKGKRVGSVSNSSSSAVVIEDGSEEDDDEEEEGTRRSMKKRSSKIFGFSVTQDEEEYMDSEHPPVTRQFFPVEEPDVAVASGGGSSTFPRAHWVGVKFCQSETLGAGKSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFSIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNSESTGTTADHNLDLSLGNSSSKTCNNQASGNHTTNAATHDQHLQSESNWRNGGSKPKLVNILPKPCNRSNKDAHGRDVHGESEALRMLSQTHLHSPASNEMQRYGPYRSPGGESQMLQNFALIHPPNFHFPSSSIGGRIGSDLSLSMADQQQWQSGPPHYLATAAASSGFPPQIRPSSQGWLQKNGFHTLMRPS* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0124 513 SMART rav1_2 253 316 IPR001471 GO:0003700|GO:0006355
Apr3g0124 513 SMART rav1_2 161 223 IPR001471 GO:0003700|GO:0006355
Apr3g0124 513 MobiDBLite consensus disorder prediction 141 160 - -
Apr3g0124 513 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 511 - -
Apr3g0124 513 MobiDBLite consensus disorder prediction 37 51 - -
Apr3g0124 513 MobiDBLite consensus disorder prediction 1 20 - -
Apr3g0124 513 CDD AP2 161 216 IPR001471 GO:0003700|GO:0006355
Apr3g0124 513 MobiDBLite consensus disorder prediction 1 74 - -
Apr3g0124 513 PRINTS Ethylene responsive element binding protein signature 254 265 IPR001471 GO:0003700|GO:0006355
Apr3g0124 513 PRINTS Ethylene responsive element binding protein signature 292 312 IPR001471 GO:0003700|GO:0006355
Apr3g0124 513 SUPERFAMILY DNA-binding domain 252 312 IPR016177 GO:0003677
Apr3g0124 513 ProSiteProfiles AP2/ERF domain profile. 253 310 IPR001471 GO:0003700|GO:0006355
Apr3g0124 513 CDD AP2 252 312 IPR001471 GO:0003700|GO:0006355
Apr3g0124 513 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 511 - -
Apr3g0124 513 SUPERFAMILY DNA-binding domain 160 218 IPR016177 GO:0003677
Apr3g0124 513 Pfam AP2 domain 252 301 IPR001471 GO:0003700|GO:0006355
Apr3g0124 513 Pfam AP2 domain 161 209 IPR001471 GO:0003700|GO:0006355
Apr3g0124 513 MobiDBLite consensus disorder prediction 320 373 - -
Apr3g0124 513 Gene3D AP2/ERF domain 160 219 IPR036955 GO:0003700|GO:0006355
Apr3g0124 513 Gene3D AP2/ERF domain 252 311 IPR036955 GO:0003700|GO:0006355
Apr3g0124 513 ProSiteProfiles AP2/ERF domain profile. 161 217 IPR001471 GO:0003700|GO:0006355
Apr3g0124 513 MobiDBLite consensus disorder prediction 320 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0124 Apr-Chr3 2172451 2176033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0124 1 340 AP2-EREBP Transcription Factor Family AT4G36920 68.451 5.73e-138 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Apr3g0124 AP2 3.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0124 K09284 - gmx:100792442 878.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0124 3 2172451 2176033 Apr3g0124 3 2172451 2176033 ECH
Apr7g0894 7 15965127 15969564 Apr3g0124 3 2172451 2176033 PCT