Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0113 ATGGCCGTGGAGCTCATGATGGGTTACAGGAACGAGAGTTTCACCAGCAAAGCCGAAGAGAATGCGGTTCAAGAAGCTGCATCTGGTTTGGAGAGCGTCGAAAAGCTCATAAGGTTGCTCTCTCAGACGCAGACACGTCAACAATACAACTCTTCTTCTTCATCTTCCAATAACCAAATCGAGAGGGACTGCAAAGCCGTCGCTGACGTGGCAGTTTCCAAGTTCAAGAAGGTCATTTCGCTTCTGGGTCGAACCAGAACCGGTCACGCTCGATTCAGAAGAGCCCCTTTGCCTCCACCGAACCAAACGCAACCTTCTGAACCCACCCCTTTTCATGCCACCCCTTTGCAGCAGATCCCACCCACCATTCACCAAATCCCCAAAAACGGAATCACCCAGAGGGCCGTTAACGTCAATGATTCCTCTTCCAAGACCATTAATTTCTCTTACTCCTCTTCTTTCATCTCGTCCCTCACCGGCGACGCCGACACCAAGCAACCGGCTGCGTCATCACCGGCCGCCGCGGGGACTTTTCAGATCACGAATCTCTCTCAGGTGTCGTCGGCGGGGAAGCCTCCGCTTTCGTCCTCTTCGATGAAGAGGAAGTGCAGCTCTGAGAATTTGGATTCTGGCAAGTGTGCTAGTTCCTCTGGCCGTTGCCATTGTTCCAAGAAGAGTAGGAAAATGAGGTTGAAGAGGATAGTGAGGGTACCAGCTATTAGCTTGAAAATGGCTGATATTCCCCCAGATGATTATTCTTGGAGAAAGTATGGACAAAAACCTATTAAAGGATCCCCACATCCAAGGGGTTACTACAAGTGCAGTAGCGTTAGGGGGTGTCCAGCGCGCAAACATGTGGAGCGAGCCTTGGATGATCCATCTATGCTGGTTGTGACCTATGAGGGAGAGCACAATCACACTCTCTCTGCTGCTGATGCTACTAATCTCATTCTAGAATCGTCTTAA 966 0.5041 MAVELMMGYRNESFTSKAEENAVQEAASGLESVEKLIRLLSQTQTRQQYNSSSSSSNNQIERDCKAVADVAVSKFKKVISLLGRTRTGHARFRRAPLPPPNQTQPSEPTPFHATPLQQIPPTIHQIPKNGITQRAVNVNDSSSKTINFSYSSSFISSLTGDADTKQPAASSPAAAGTFQITNLSQVSSAGKPPLSSSSMKRKCSSENLDSGKCASSSGRCHCSKKSRKMRLKRIVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHTLSAADATNLILESS* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0113 321 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 15 321 IPR044810 GO:0003700
Apr3g0113 321 Pfam WRKY DNA -binding domain 250 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr3g0113 321 MobiDBLite consensus disorder prediction 184 213 - -
Apr3g0113 321 SMART WRKY_cls 248 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Apr3g0113 321 MobiDBLite consensus disorder prediction 89 116 - -
Apr3g0113 321 SUPERFAMILY WRKY DNA-binding domain 245 308 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr3g0113 321 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 15 321 - -
Apr3g0113 321 Pfam Plant zinc cluster domain 200 246 IPR018872 -
Apr3g0113 321 Gene3D WRKY domain 234 309 IPR036576 GO:0003700|GO:0006355|GO:0043565
Apr3g0113 321 ProSiteProfiles WRKY domain profile. 243 309 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0113 Apr-Chr3 1964250 1966981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0113 1 306 WRKY Transcription Factor Family AT2G24570 45.238 1.84e-74 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Apr3g0113 WRKY 3.2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0113 - - gmx:100170685 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0113 3 1964250 1966981 Apr3g0113 3 1964250 1966981 ECH
Apr3g0113 3 1964250 1966981 Apr7g0886 7 15874523 15876606 PCT