Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0108 ATGGCTCTCAGAGAACAACCTCACGATGCACACAACCACTCTCCCTCGTTCATCGATACCCTCCTCTGTAAAGAGCAAGATACCTTCGAGGATGATTTTGATGCCAATGGTTTTGAGTCTGAACCCAATAAAGATGGCGACCCCTCTGCCAGAAAGTTGCAATCTTTGCCCTTGGTTTTACTCCACAATGACTTGTTCTGGGAAGATGAAGAGCTTGTTTCCTTAATCTCCAAAGAGGGAGAGACCCATTTGTGTTCTCGCAATCTCATTGTTGATGGGCCCTTAAATGGGCCTCGTGTTGAGGCTGTGAACTGGATTTCTAAAGTTTGTGGGCACTATGGGTTCTCTGCTTTGACCACTGTTCTTGCTGTTAACTACTTTGATAGGTTCATCCCCAGCTTGAAGTTTCAGAGAGACAAGCCGTGGATGACTCAGCTCGCTGCAGTTGCTTGTTTATCCCTTGCTGCCAAAACGGAAGAGACCCATGTGCCACTTCTTTTAGACCTCCAAGTGGAGGAATCAAAGTTTGTGTTTGAAGCTAAGACCATTCAGAGAATGGAGCTACTAGTGTTGTCAACTCTTAAGTGGAGGTTGCATCCGGTGACCCCAATTTCCTTCTTTGAACACATTGTTAGAAGGCTTGGTCTAAAGAGTCGCTTGCACTGGGAGTTTCTATGGCGTTGTGAGCGAGTTCTTCTCAATGTCATTGCAGATTCAAGGGTTATGAGTTATCTTCCTTCTACATTAGCTGCTGCTACAATGATCCATGTTATTAAAGAGATTGAACCGTTTAATGCTACCGAGTACATTGATCAACTTCTGGGTTTACTAAAGATTAGCGAGGAACAAGTGAACCAGTGCTACGAACTCATGCAGCAACTATTTGGTTGTTGTGAAGGCATTTACAGTCTTCACCCGAAGCGGAAGCGTCTATCTGAACCTGGTAGCCCAGGAGGTGTCATCGATGCATCTTTCAGTTGTGATGACAGCTCAAATGATTCATGGACAATGGCATCATCGGTCTCACTTTCACTGGAGCCTCTATTTAAGAGGAGGAGAGCTCAGGACCAGCAAATGCGATTGCCTTCTGTTAATCGTGTGTCAATTGATGTTCTTAATAGCCCTCGTTAA 1131 0.4492 MALREQPHDAHNHSPSFIDTLLCKEQDTFEDDFDANGFESEPNKDGDPSARKLQSLPLVLLHNDLFWEDEELVSLISKEGETHLCSRNLIVDGPLNGPRVEAVNWISKVCGHYGFSALTTVLAVNYFDRFIPSLKFQRDKPWMTQLAAVACLSLAAKTEETHVPLLLDLQVEESKFVFEAKTIQRMELLVLSTLKWRLHPVTPISFFEHIVRRLGLKSRLHWEFLWRCERVLLNVIADSRVMSYLPSTLAAATMIHVIKEIEPFNATEYIDQLLGLLKISEEQVNQCYELMQQLFGCCEGIYSLHPKRKRLSEPGSPGGVIDASFSCDDSSNDSWTMASSVSLSLEPLFKRRRAQDQQMRLPSVNRVSIDVLNSPR* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0108 376 PANTHER CYCLIN-D3-2 11 359 - -
Apr3g0108 376 Pfam Cyclin, N-terminal domain 99 198 IPR006671 -
Apr3g0108 376 PANTHER CYCLINS 11 359 IPR039361 -
Apr3g0108 376 Pfam Cyclin, C-terminal domain 201 295 IPR004367 -
Apr3g0108 376 Gene3D - 99 199 - -
Apr3g0108 376 Gene3D - 200 289 - -
Apr3g0108 376 SUPERFAMILY Cyclin-like 66 199 IPR036915 -
Apr3g0108 376 SUPERFAMILY Cyclin-like 202 298 IPR036915 -
Apr3g0108 376 CDD CYCLIN 99 191 IPR013763 -
Apr3g0108 376 SMART Cyclin_C_2 201 314 IPR004367 -
Apr3g0108 376 SMART cyclin_7 104 192 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0108 Apr-Chr3 1892063 1893896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0108 1 366 Core Cell Cycle Gene Families AT5G67260 50.667 1.12e-119 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0108 K14505 - gmx:100785030 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0108 3 1892063 1893896 Apr7g0880 7 15824362 15826139 ECH
Apr9g0393 9 5412460 5428171 Apr3g0108 3 1892063 1893896 ECH
Apr5g1494 5 18901001 18902810 Apr3g0108 3 1892063 1893896 ECH
Apr3g0108 3 1892063 1893896 Apr3g0108 3 1892063 1893896 ECH
Apr3g0108 3 1892063 1893896 Apr7g0880 7 15824362 15826139 PCT