Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0094 ATGACCTTCACCAAGGAGGATGAAGTTGATGATCATGTGTCAATCAATAACAATTATGTAGATGGTGGATCACAGAACATTGACACCAACGAAATTGTGACACCTGAAGAGGATAACTTTGGAGAATGGTTGAGTTTAGGCCTAAAAGGAGACATGCCTCATGAAGCAGTGGAACAAAACCAATACTCCCAATCAAAACCTCTCCACAACAAGGTATTCTCATGCAACTTCTGCATGAGAAAGTTTTATAGTTCACAAGCCTTAGGGGGTCACCAGAATGCACACAAGAGGGAAAGAGAAGCAGCCAGAAGTTACCAATCTCATAGGATGATGACAACATCAATGGGATTTTCTTGTTCTTCTTTGGCATCTCGGTCACTGGGAATTCAGCCCCACTCGCTTGTGCACAAGCCAAGCAGAGAAAGGACTAATATGGTGGCTAGATTCAATGATGCCAGTTCTGGGATTAATGGAATGGCATCATGGGCATGGCCACCCTTTATGCTTGAACAAGCCGTTGATTTCATATGGCCAGGTAGCTTTCGAATGGATTTGCCAAAGCAAGAATCAAATATTAATAAGCTTGACTTAGATCTTCGCCTCTGA 606 0.4274 MTFTKEDEVDDHVSINNNYVDGGSQNIDTNEIVTPEEDNFGEWLSLGLKGDMPHEAVEQNQYSQSKPLHNKVFSCNFCMRKFYSSQALGGHQNAHKREREAARSYQSHRMMTTSMGFSCSSLASRSLGIQPHSLVHKPSRERTNMVARFNDASSGINGMASWAWPPFMLEQAVDFIWPGSFRMDLPKQESNINKLDLDLRL* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0094 201 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 100 IPR013087 -
Apr3g0094 201 PANTHER ZINC FINGER PROTEIN 4-LIKE 1 201 - -
Apr3g0094 201 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Apr3g0094 201 Gene3D Classic Zinc Finger 53 127 - -
Apr3g0094 201 PANTHER ZINC FINGER PROTEIN 4-LIKE 1 201 - -
Apr3g0094 201 SUPERFAMILY beta-beta-alpha zinc fingers 69 100 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0094 Apr-Chr3 1621085 1622032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0094 71 192 C2H2 Transcription Factor Family AT1G24625 42.857 9.58e-21 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0094 - - ccaj:109809498 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0094 3 1621085 1622032 Apr3g0094 3 1621085 1622032 ECH