LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr3g0092	ATGTCTCGGAGCATCCAAGAGCAAGAACAGCCACTGTTAGAGGACTCGTTCGAAGGAGAAGAGGAGGCACAAGAAGCGGCTTATGATTCCTCGGAGAAGATCGTGGTGGTGGGAATCGACGAGTGGGATAGCGAAGAGAATTGGGCCAGGGTGCCGCCGTTCTCGTGGAAGAAGCTATGGCTGTTTACTGGGCCGGGCTTTTTGATGAGTATTGCGTTTTTGGATCCTGGGAACTTGGAGGGGGATCTTCAGGCTGGTGCCATTGCTGGGTACTCGCTGTTGTGGCTTCTGATGTGGGCCACGGCCATGGGCCTGTTGATCCAGCTCTTGTCGGCGCGGCTCGGCGTGGCGACGGGGAAGCACTTGGCTGAGCTGTGCAGGGAGGAGTATCCAACATGGGCCAGGACGGTGCTTTGGGTGATGGCTGAACTCGCTCTTATTGGCTCCGATATTCAAGAGGTTATTGGCAGCGCTATCGCTATCAGAATTCTCAGTCATGGGGTCATTCCTCTTTGGGCCGGGGTCATCATTACAGCTCTTGATTGTTTTATTTTTCTCTTTCTTGAGAACTATGGTGTGAGAACATTGGAAGCTTTTTTTGCTGTTCTCATTGGTATAATGGCAATCTCGTTCGCATGGATGTTTGGCGAAGCGAAGCCTAGTGGCAAGGAACTTATTCTTGGCATTTTGGTTCCAAAATTAAACTCCAAAACTATACAGCAAGCTGTTGGAGTTGTGGGCTGCCTTATTATGCCTCACAATGTGTTCTTGCACTCTGCTCTTGTTCAATCAAGGCAGGTTGACCGCAGTAAGAAAGGCCGAGTGCAAGAAGCTCTTAATTATTACTCTATAGAGTCTACCCTTGCCCTTATAGTCTCCTTTGTCATAAATATATTTGTCACAACTGTGTTTGCTAAGGGGTTTTATGGTTCTGAACTTGCAAATAGCATTGGTCTAGTAAATGCCGGACAGTATCTTCAGGAGACATATGGTGGTGGACTGCTTCCGATATTATACATATGGGGTATTGGGTTATTAGCGGCAGGCCAAAGTAGCACTATTACTGGCACTTATGCTGGACAATTTATCATGGGAGGTTTTCTAAATTTAAGGTTAAAAAAATGGATAAGGGCATTAATTACCCGAAGTTGTGCTATAATCCCAACCATGATAGTTGCTCTGATATTTGATACCACAGAGGAATCTTTAGATGTTTTGAATGAGTGGCTTAATGTTCTTCAGTCAGTCCAAATCCCCTTTGCTCTTATTCCCTTGCTTTGTCTGGTGTCAAAGGAGCAGATAATGGGCACTTTCAGAATTGGCGCTGTCCTCAAGACTATATCATGGCTTGTGGCTGCGCTGGTGATAGTGATTAATGGCTATCTTCTGGTGGAATTCTTCTCCTCTGAAGTGAATGGACCAACATTTGGCGCTGTAGTGGGTGCATTAACGGCTGCATATATTGCATTCGTTATATACCTTATCTGGCGTGCCATCACCTTTTTACCTTGGCAAAGTGTGACACGATCAAAGACAATTGTTCCCTCAGAGAGCTAA	1557	0.4618	MSRSIQEQEQPLLEDSFEGEEEAQEAAYDSSEKIVVVGIDEWDSEENWARVPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLIQLLSARLGVATGKHLAELCREEYPTWARTVLWVMAELALIGSDIQEVIGSAIAIRILSHGVIPLWAGVIITALDCFIFLFLENYGVRTLEAFFAVLIGIMAISFAWMFGEAKPSGKELILGILVPKLNSKTIQQAVGVVGCLIMPHNVFLHSALVQSRQVDRSKKGRVQEALNYYSIESTLALIVSFVINIFVTTVFAKGFYGSELANSIGLVNAGQYLQETYGGGLLPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWIRALITRSCAIIPTMIVALIFDTTEESLDVLNEWLNVLQSVQIPFALIPLLCLVSKEQIMGTFRIGAVLKTISWLVAALVIVINGYLLVEFFSSEVNGPTFGAVVGALTAAYIAFVIYLIWRAITFLPWQSVTRSKTIVPSES*	519

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr3g0092	518	PRINTS	Natural resistance-associated macrophage protein signature	138	164	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Apr3g0092	518	PRINTS	Natural resistance-associated macrophage protein signature	168	187	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Apr3g0092	518	PRINTS	Natural resistance-associated macrophage protein signature	193	214	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Apr3g0092	518	PRINTS	Natural resistance-associated macrophage protein signature	242	265	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Apr3g0092	518	PRINTS	Natural resistance-associated macrophage protein signature	349	368	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Apr3g0092	518	PRINTS	Natural resistance-associated macrophage protein signature	377	394	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Apr3g0092	518	PRINTS	Natural resistance-associated macrophage protein signature	411	430	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Apr3g0092	518	Hamap	Divalent metal cation transporter MntH [mntH].	45	467	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Apr3g0092	518	Pfam	Natural resistance-associated macrophage protein	80	441	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Apr3g0092	518	PANTHER	METAL TRANSPORTER NRAMP3 PROTEIN	18	517	-	-
	Apr3g0092	518	PANTHER	SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER	18	517	IPR001046	GO:0016020\|GO:0030001\|GO:0046873
	Apr3g0092	518	MobiDBLite	consensus disorder prediction	1	29	-	-
	Apr3g0092	518	TIGRFAM	nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family	57	435	IPR001046	GO:0016020\|GO:0030001\|GO:0046873

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr3g0092	Apr-Chr3	1567620	1571604	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr3g0092	33	504	Inorganic Solute Cotransporters	AT2G23150	79.368	0.0	780

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr3g0092	K21398		-	gmx:100812381	943.725

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr3g0092	3	1567620	1571604	Apr3g0092	3	1567620	1571604	ECH
	Apr7g0869	7	15695754	15700114	Apr3g0092	3	1567620	1571604	PCT