Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0069 ATGAGTTGCAACGGTTGCCGCGTTCTTCGAAAGGGTTGCAGTGAGTCATGTATTTTGCGCCCTTGCTTGCAGTGGATGGAAACCGCTGAAGCCCAAGGCCACGCCACTGTCTTCGTAGCCAAATTCTTTGGTCGTGCTGGTCTTATGTCTTTCATTTCCAACGTTCCCCAAAACCAACGACCTGCTCTGTTTCAGTCCCTGCTGTTTGAAGCGTGCGGAAGAACGGTCAACCCGGTCAACGGTGCCGTGGGCCTTCTCTGGACCGGAAACTGGCACGTGTGCCAGGCGGCGGTCGAGACTGTGCTGCGAGGCGGCACCCTCAGGCCCATACCGGAGCTTATGGGCCTCGAGGCTCCTGCCTCCGCCGCCGACGAGGCATCGGAGGCCGAAGTCGCCTGCACCGACACTTGGAGGATCCGAGAGCCCAATCCGAACCCAAATTTCCGGTTCACAAGTTCGCGATCTCATAACAAGGTCTCTTCCAGCGGGAAAAGGAAGCGATCGGAGGAGCTCGTGAAGCTTCAGGCGGGGCCGAATCTCGATCTTCGTTTGACTCCGATTTTCCTGCAAAAGGTGGAGAAGCGTCGGTCGGGCTCACCGTCGATGACCTCGGAGGAATCGGTTACGACGACGGCGTGCCTTGAAAGTGGGATTGGAGATCAGTGGGGTCACGGCGGAGACCGGAAAGTTCTCAACCTTTTCATTTGA 708 0.5734 MSCNGCRVLRKGCSESCILRPCLQWMETAEAQGHATVFVAKFFGRAGLMSFISNVPQNQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLRPIPELMGLEAPASAADEASEAEVACTDTWRIREPNPNPNFRFTSSRSHNKVSSSGKRKRSEELVKLQAGPNLDLRLTPIFLQKVEKRRSGSPSMTSEESVTTTACLESGIGDQWGHGGDRKVLNLFI* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0069 235 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Apr3g0069 235 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Apr3g0069 235 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 235 - -
Apr3g0069 235 MobiDBLite consensus disorder prediction 140 170 - -
Apr3g0069 235 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0069 Apr-Chr3 1199966 1201269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0069 1 235 AS2 family AT4G37540 58.800 1.34e-86 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Apr3g0069 LOB 1.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0069 - - gmx:100816480 379.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0069 3 1199966 1201269 Apr7g0845 7 15489923 15491233 ECH
Apr5g1468 5 18716020 18716584 Apr3g0069 3 1199966 1201269 ECH
Apr3g0069 3 1199966 1201269 Apr3g0069 3 1199966 1201269 ECH
Apr3g0069 3 1199966 1201269 Apr7g0845 7 15489923 15491233 PCT