Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0067 ATGGCTCAGAAGATTGGAAAATCCACGCGCCGCCCCGGCGCTTCATCTAAGGCCAGGGTTTATGCCGATGTTAACGTTGTTCGCCCCAAGGAATATTGGGATTACGAATCCCTCAACGTCCAGTGGGGGGAGCAAGATGATTATGAGGTGGTGAGGAAGGTGGGTAGGGGAAAATACAGTGAGGTGTTTGAAGGTGTTCACTGCACGGATGGTGAAAAATGTATCATCAAGATCCTGAAACCTGTAAAGAAGAAGAAGATAAAGAGGGAAATCAAAATATTACAGAATCTTTGTGGAGGGCCTAATATTGTAAAGTTGCTTGACATTGTTAGAGACCAGCAATCGAAGACCCCAAGTCTTATATTTGAATATGTCAATAACACTGATTTTAAAGTGCTTTATCCTACATTGTCAGATTATGATATACGATACTATATCTATGAACTTCTAAAGGCACTGGATTATTGCCATTCACAAGGAATCATGCATCGGGATGTAAAACCACATAATGTAATGATTGACCATGAACAGCGTAAGCTTCGCCTTATAGATTGGGGGCTTGCAGAATTCTATCATCCTGGAAAAGAATATAATGTTCGAGTGGCTTCAAGATATTTCAAAGGCCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCTCTAGATTTATGGAGTCTTGGTTGTATGTTTGCTGGGATGATATTCCGTAAGGAGCCATTCTTTTATGGACACGATAACTATGATCAACTGGTCAAAATAGCTAAGGTACTTGGGACGGATGAGTTAAGTGCATATTTGAATAAGTATCGAATAGAGTTGGATCCGCATCTTGCAGCACTCATTGGGAGGCATGGTCGTAAGCCATGGGCAAAGTTCATTAATGTAGAAAATCATCACTTGGCTGTTCCTGAGGCTGTTGACTTTGTTGACAAGTTACTGCGGTATGATCACCAAGAACGTCCCACTGCAAAAGAAGCCATGGCCCATCCATACTTCAATCCAATTAGAAGTGCAGAAAGTAGTAGAACTCGTACGCATTGA 1044 0.4148 MAQKIGKSTRRPGASSKARVYADVNVVRPKEYWDYESLNVQWGEQDDYEVVRKVGRGKYSEVFEGVHCTDGEKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPTLSDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIAKVLGTDELSAYLNKYRIELDPHLAALIGRHGRKPWAKFINVENHHLAVPEAVDFVDKLLRYDHQERPTAKEAMAHPYFNPIRSAESSRTRTH* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0067 347 Gene3D Transferase(Phosphotransferase) domain 1 125 333 - -
Apr3g0067 347 PANTHER CASEIN KINASE II SUBUNIT ALPHA 1 339 IPR045216 GO:0004674|GO:0006468
Apr3g0067 347 PANTHER BNAA04G13490D PROTEIN 1 339 - -
Apr3g0067 347 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Apr3g0067 347 SUPERFAMILY Protein kinase-like (PK-like) 20 336 IPR011009 -
Apr3g0067 347 ProSiteProfiles Protein kinase domain profile. 48 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g0067 347 ProSitePatterns Protein kinases ATP-binding region signature. 54 77 IPR017441 GO:0005524
Apr3g0067 347 Pfam Protein kinase domain 48 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g0067 347 SMART serkin_6 48 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr3g0067 347 CDD STKc_CK2_alpha 29 333 IPR045216 GO:0004674|GO:0006468
Apr3g0067 347 Gene3D Phosphorylase Kinase; domain 1 48 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0067 Apr-Chr3 1136174 1144410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0067 46 341 Core Cell Cycle Gene Families AT1G76540 29.841 1.03e-41 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Apr3g0067 Pkinase 1.2e-65 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0067 3 1136174 1144410 Apr3g0067 3 1136174 1144410 ECH