Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0053 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCGGCGCTGAAAGCTGGAGTAGTCAAACATGGGGCTGGAAAATGGCGCACTATACTTACAGATCCCGAGTTTAGTGCCATTTTGCGCATGCGTTCAAATGTAGATCTTAAGGATAAATGGAGGAATATAAATGTGACGGCAATATGGGGATCCCGGCAGAAGGCAAAGCTTGCTCTTAAAAGGAGCCTACCAGCCCCCAAAAATGACAACAACCATACAGCCTTGAGTGCTGCAGTTCAACATGATGAAATTCTCGATACTAAGCCCTTAGCAGTTTCTTTTGGAACATTGCAATCTTCTAACTCGAAAGAACAAATATCAAGGTTGGGGGATAATGATATATTAGAGGCCATTGTCAATTTGAAGGTGCCAAAAGGTTCTGACAAGGCCGCCATTGCTTCTTACATTGAGGAAAAATATCGGTCTCTGCCAAGTCTCACAAAGCTACTGTCAACCAAACTGAAGCATATGGTGGCAAGTGGCAAAATAATCAAGGAAAAGCATAAGTACAGGATTGCATTGAGTTCAGCAGTATCTGAGAAAAGGAAATGCTCTTCCTTGATACTTGTGGAAGGGAGGCCCAAAGATTCTCCAGAAGCAGGTAAGCATGATGATGTCAAAATCCTTTCAAAATCCCAAATTGATGCGGAGATATCAAAAGTGAAGGGCATGACAGCTCAAGAGGCAGCTGCTGCAGCTGCAAAAGCAGTTGCTGAGGCAGAAGTTGCCATTGCACAGGCTGAGGCAGCAGCACGGGAAGCAGAGGCTGCAGAAGCTGAAGCTGACGCGGCTCAAGTGTTTGCAAAAGCTGCAATGAAGGCGCTAAAATGCAAAATGCTTTGA 882 0.4501 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRSLPAPKNDNNHTALSAAVQHDEILDTKPLAVSFGTLQSSNSKEQISRLGDNDILEAIVNLKVPKGSDKAAIASYIEEKYRSLPSLTKLLSTKLKHMVASGKIIKEKHKYRIALSSAVSEKRKCSSLILVEGRPKDSPEAGKHDDVKILSKSQIDAEISKVKGMTAQEAAAAAAKAVAEAEVAIAQAEAAAREAEAAEAEADAAQVFAKAAMKALKCKML* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0053 293 SMART h15plus2 120 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr3g0053 293 PANTHER SINGLE MYB HISTONE 4 1 293 IPR044597 GO:0003691
Apr3g0053 293 PANTHER MYB TRANSCRIPTION FACTOR 1 293 - -
Apr3g0053 293 SUPERFAMILY "Winged helix" DNA-binding domain 125 196 IPR036390 -
Apr3g0053 293 SUPERFAMILY Homeodomain-like 2 66 IPR009057 -
Apr3g0053 293 CDD SANT_TRF 6 57 - -
Apr3g0053 293 Gene3D - 124 216 IPR036388 -
Apr3g0053 293 Gene3D - 2 59 - -
Apr3g0053 293 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 118 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr3g0053 293 Pfam linker histone H1 and H5 family 127 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr3g0053 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Apr3g0053 293 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Apr3g0053 293 SMART sant 4 59 IPR001005 -
Apr3g0053 293 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Apr3g0053 293 Coils Coil 243 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0053 Apr-Chr3 927780 933981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0053 1 292 Single Myb Histone (SMH) Gene Family AT5G67580 53.898 4.19e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Apr3g0053 Linker_histone 1.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0053 K09422 - gmx:100779583 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0822 7 15265421 15270153 Apr3g0053 3 927780 933981 PCT