Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0039 ATGAAGGGCATGGAAAATGATGACACTGTTGACGTTAACAATCAAAATAATTGGTTGGGTTTCTCACTTTCTCCTCAAATCAATATAGGTGTTCCTTCACACACTCATCAGTCACAACCTTCATCTGCTGCTGCTGCTGCTGCTGCTGAAGTTGTTCCCACAAGCTTTTACCACTCTGCTCCTCTTAATAACTATGCCTTCTACTATGGACTTGAAGCTGAGAATGTTGGGTTGTATTCAGCACTGCCTATTATGCCTCTCAAATCTGATGGCTCTCTCTTTGGAATGGACGCTCTGAGTAGGTCACAAGCACAAGCAATGGCTACTTCTTCAACGCCAAAACTGGAGAATTTCTTAGGAGGGGAAGCGATGGGGACCCCTCACTATGAATGTAGTGCCACTGAAACAATGCCTCTTAGCTTAGATAGTTTTTACCAAAACCATGTCCAACAACACATTAACACCCAACAACAACAACATCAACAGCAAGAGCTTCAAGCCCAACACTTGTCATATTACTCCACCTTGAGAAACCATGATGTAATGTTAGAGGGGTCAAAGCAAAGTCAAACTTCAGATAGCAATGTTCAGGTCCCAAACATGGGTGAGGATGGAGTTCCTGGTCTTAAGAGCTGGGTGGTGAGAAACTTCGCAGCTAGCCATGCACAGGAGTCAAAGATGATTGTTGCTGTGGAGGAAAATGGAGGTGAATCAGGGTCCATTGGATCAATGGCATATGGGGATTTGCAGTCTTTAAGCTTGTCCATGAGTCCTAGTTCACAGTCAAGCTGTGTTACAAGTTCACAACGTGCATCACCTGCTGTCATTGATTCTGTTGCCATGGATACAAAGAAAAGAGGACCTGAAAAGGTTGACCAGAAGCAAATTGTTCATAGGAAATCCATTGACACTTTTGGACAAAGAACATCACAATATAGAGGTGTAACAAGGCACAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAACAGCTGCAAGAAAGAGGGCCAAAGCAGAAAAGGAAGACAAGGGGGTTATGATATGGAAGAAAAAGCTGCGAGAGCTTATGATCTGGCCGCACTCAAGTATTGGGGTCCCTCCACTCACATAAACTTCCCTTTGGAGAATTATCAAAACGAACTTGAGCAAATGAAGAACATGACCAGACAGGAATATGTGGCTCATTTAAGAAGAAAAAGCAGTGGATTCTCAAGAGGGGCTTCCATGTACAGAGGAGTAACAAGCAGACACCACCAACATGGAAGGTGGCAGGCTCGAATTGGTAGGGTGGCTGGAAATAAAGATCTATATCTTGGAACCTTTAGTACCCAAGAGGAAGCAGCTGAAGCCTATGATATTGCTGCTATAAAATTCCGGGGAGTCAATGCTGTGACCAACTTTGATATAACAAAATATGATGTAGAGAAAATTATGGCGAGTAGTAACCTTCTTAGCAGTGAACTAGCTAGGCGGAACAAGGAGACAGATGGTGGAACTCAGTATATTGATCACCAGCCTTCTGCATATGATGACACTCAAGAAGCCATTCTAATGCAGAAGAGTAGTGAGAGTCAATCAGATCAGTGGAAGATGGTTCTCTATCAATCCCCTCAACAACTTGACCTCCAGAACCCACCAAGAATTGAGACTCAGAGAGGCAACCAGTCCTTCTCAGTTGTGGGTTTAGACAACATTTTTCATCAAGAAGTAGAGGAATCAAGTAAGATGAGGACACATGTATCAAATCCTTCTTCATTGGCCACAAGTTTGAGCAGCTCAAGAGAAGGTAGCCCAGATAGAACAAGCTTGCCAATGCTCTCTGGAATGCCTTCAACAGCATCCAAACTATTGGCTACTAATCCAAATAGTAACATGAATTCTTGGGATCCATCACCCCATTTGAGGCCTGCACTTTCTTTGCCTCATATGCCAGTTTTTGCTGCTTGGACAGATGCATAG 1962 0.4358 MKGMENDDTVDVNNQNNWLGFSLSPQINIGVPSHTHQSQPSSAAAAAAAEVVPTSFYHSAPLNNYAFYYGLEAENVGLYSALPIMPLKSDGSLFGMDALSRSQAQAMATSSTPKLENFLGGEAMGTPHYECSATETMPLSLDSFYQNHVQQHINTQQQQHQQQELQAQHLSYYSTLRNHDVMLEGSKQSQTSDSNVQVPNMGEDGVPGLKSWVVRNFAASHAQESKMIVAVEENGGESGSIGSMAYGDLQSLSLSMSPSSQSSCVTSSQRASPAVIDSVAMDTKKRGPEKVDQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYQNELEQMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTSRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDITKYDVEKIMASSNLLSSELARRNKETDGGTQYIDHQPSAYDDTQEAILMQKSSESQSDQWKMVLYQSPQQLDLQNPPRIETQRGNQSFSVVGLDNIFHQEVEESSKMRTHVSNPSSLATSLSSSREGSPDRTSLPMLSGMPSTASKLLATNPNSNMNSWDPSPHLRPALSLPHMPVFAAWTDA* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0039 653 ProSiteProfiles AP2/ERF domain profile. 410 469 IPR001471 GO:0003700|GO:0006355
Apr3g0039 653 SUPERFAMILY DNA-binding domain 310 376 IPR016177 GO:0003677
Apr3g0039 653 MobiDBLite consensus disorder prediction 574 631 - -
Apr3g0039 653 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 14 651 - -
Apr3g0039 653 CDD AP2 409 471 IPR001471 GO:0003700|GO:0006355
Apr3g0039 653 CDD AP2 310 374 IPR001471 GO:0003700|GO:0006355
Apr3g0039 653 SUPERFAMILY DNA-binding domain 409 470 IPR016177 GO:0003677
Apr3g0039 653 Gene3D AP2/ERF domain 410 471 IPR036955 GO:0003700|GO:0006355
Apr3g0039 653 Gene3D AP2/ERF domain 310 376 IPR036955 GO:0003700|GO:0006355
Apr3g0039 653 PRINTS Ethylene responsive element binding protein signature 312 323 IPR001471 GO:0003700|GO:0006355
Apr3g0039 653 PRINTS Ethylene responsive element binding protein signature 451 471 IPR001471 GO:0003700|GO:0006355
Apr3g0039 653 SMART rav1_2 311 380 IPR001471 GO:0003700|GO:0006355
Apr3g0039 653 SMART rav1_2 410 475 IPR001471 GO:0003700|GO:0006355
Apr3g0039 653 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 14 651 - -
Apr3g0039 653 MobiDBLite consensus disorder prediction 578 631 - -
Apr3g0039 653 Pfam AP2 domain 411 461 IPR001471 GO:0003700|GO:0006355
Apr3g0039 653 Pfam AP2 domain 311 366 IPR001471 GO:0003700|GO:0006355
Apr3g0039 653 ProSiteProfiles AP2/ERF domain profile. 311 374 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0039 Apr-Chr3 694503 698593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0039 391 653 AP2-EREBP Transcription Factor Family AT4G37750 25.000 3.45e-15 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Apr3g0039 AP2 4.3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0039 K09285 - gmx:100787611 981.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0808 7 15145507 15148683 Apr3g0039 3 694503 698593 PCT