Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0037 ATGGGGAGGGCTCCTTGCTGCGACAAAGCCAACGTAAAGAGAGGTCCATGGTCGCCTGAAGAAGACGCCAAACTCAAGTCTTATATCGAGCAGCACGGAACCGGTGGCAACTGGATAGCCCTGCCCCAGAAAATAGGCCTCAAAAGGTGTGGGAAAAGTTGTCGTCTCAGATGGCTAAATTATCTTCGCCCAAACATCAGACACGGGGGTTTCTCAGAAGAAGAGGACAACATAATTTGCAGTCTCTATGTTAATATTGGAAGCAGGTGGTCAATCATAGCAGCGCAATTACCAGGACGTACGGATAATGATATAAAGAATTATTGGAACACTAGGCTGAAGAAGAAGCTATTAGGAAGGCAAAGGAAGGAGCAACAGGCTCAAGCTCGCAGAGTTTGCAGCATAAAGCAAGAGATCAAGAGAGAGAGTGAAAATTTGATGTTACCTATGGGAGTTATTAGCCAAACACCTTTTTGGCCAGCACAACATCCATGGCCCATTATTCCAGTGGGAAATGCTTCAATCCAGAACTATGATCTCGACAATCAAACATCATCGCTCAAAAACTTTTCTGACAACATGGTCACACTCACTAGTTGTACCAACATGAATTCACAATATACATGTGACATTTCCTTCCCACAAGACCACACTTTTCAAGGGTTTGGGAACTTCCCTAGTGATTTGAGCGAGTTGGCATGTGTGAATCCGCAACAAATAGATGGATCAATGCTGGGATTTTATGGAATGGAGTCCAAGGACTTGGCCAATGGTAGCACGAACACTTCTTCAACAGAAAGCACTAGTTGGGGAGATATAAACTCTTTGGTTTACTCACCTTTGGTTTCTAATTATGAAGATTGCCAACAAAGAATGCTTCAAGATGTTACTTTGGAGGAACTTAGGTACTTCGGGATGCAAACGCAATAA 930 0.4355 MGRAPCCDKANVKRGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIRHGGFSEEEDNIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGRQRKEQQAQARRVCSIKQEIKRESENLMLPMGVISQTPFWPAQHPWPIIPVGNASIQNYDLDNQTSSLKNFSDNMVTLTSCTNMNSQYTCDISFPQDHTFQGFGNFPSDLSELACVNPQQIDGSMLGFYGMESKDLANGSTNTSSTESTSWGDINSLVYSPLVSNYEDCQQRMLQDVTLEELRYFGMQTQ* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0037 309 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Apr3g0037 309 PANTHER OS09G0431300 PROTEIN 1 219 - -
Apr3g0037 309 PANTHER OS09G0431300 PROTEIN 209 293 - -
Apr3g0037 309 CDD SANT 71 113 IPR001005 -
Apr3g0037 309 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Apr3g0037 309 CDD SANT 16 62 IPR001005 -
Apr3g0037 309 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Apr3g0037 309 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Apr3g0037 309 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Apr3g0037 309 SMART sant 67 115 IPR001005 -
Apr3g0037 309 SMART sant 13 64 IPR001005 -
Apr3g0037 309 Gene3D - 70 144 - -
Apr3g0037 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Apr3g0037 309 Gene3D - 7 68 - -
Apr3g0037 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Apr3g0037 309 PANTHER TRANSCRIPTION FACTOR RAX3-LIKE 209 293 - -
Apr3g0037 309 PANTHER TRANSCRIPTION FACTOR RAX3-LIKE 1 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0037 Apr-Chr3 648667 650060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0037 1 279 MYB Transcription Factor Family AT3G49690 52.244 1.24e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr3g0037 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0037 K09422 - gmx:100791406 418.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0805 7 15078440 15079799 Apr3g0037 3 648667 650060 PCT