Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0033 ATGGGTCTTGATCAGGATGCTAGCAACTCAGGCCTTCACCTTATTCTAGGGTTAGCTTTGACTAGTACCCCCCAAGAAGATACCATCACTCCATCACCATCCAACAACTCCTTCTCCTCCAAATCCAATTTCATCCAGCCTGAACCATCATTAACGTTGGGTCTCTCAGGTGAGAGTTACCCACCGCAGGTGGTCAAAGTCCCCAAAAATATTGGACACAACATAGTCTCCTGTGAAGACCCTCTTGACTTGTCTACGCAGACTTCACCTCGCAGTGCTGTGTCCTCCTTCTCCAGTGGCAGGATCAAGAGAGAGAGAGATGTTAGCTATGAAGAAGTGGAGCCAACAGAGACTGAGAGGGTTTCTTCAAGAGCTAGCGACGAAGAAGAAGACGGCACCACCGCCAGAAAGAAGCTTAGGCTCACAAAAGAACAATCAGCTCTTCTAGAAGAAAGCTTCAAACAACATAGCACTCTCAATCCTAAACAGAAGCAAGCTCTAGCCAAGCAGTTAAATCTTCGGCCTCGACAAGTTGAGGTGTGGTTCCAGAACCGGAGAGCCAGAACAAAGCTGAAGCAGACAGAGGTGGATTGCGAGTTTCTAAAGAAATGTTGTGAAACGTTGACAGATGAGAACAGGAGATTACAGAAGGAGCTGCAAGAGCTAAGGGCACTGAAACTAGCTCAGCCTTTGTACATGCCTATGCCTGCAGCCACCCTCACCATGTGCCCCTCATGTGAGAGGCTCGGTGGCGTCAACGGTGGCGCTTCTCCTAAGACCCCATTTTCCATGGCTCCTAAGCCTCACTTCTACAACCCCTTCGCCAATCCTTCTGCAGCATGTTGA 846 0.4905 MGLDQDASNSGLHLILGLALTSTPQEDTITPSPSNNSFSSKSNFIQPEPSLTLGLSGESYPPQVVKVPKNIGHNIVSCEDPLDLSTQTSPRSAVSSFSSGRIKRERDVSYEEVEPTETERVSSRASDEEEDGTTARKKLRLTKEQSALLEESFKQHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELRALKLAQPLYMPMPAATLTMCPSCERLGGVNGGASPKTPFSMAPKPHFYNPFANPSAAC* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0033 281 Coils Coil 198 228 - -
Apr3g0033 281 PANTHER - 11 281 - -
Apr3g0033 281 Pfam Homeobox associated leucine zipper 192 226 IPR003106 GO:0006355|GO:0043565
Apr3g0033 281 MobiDBLite consensus disorder prediction 100 136 - -
Apr3g0033 281 MobiDBLite consensus disorder prediction 81 99 - -
Apr3g0033 281 MobiDBLite consensus disorder prediction 24 56 - -
Apr3g0033 281 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22 11 281 - -
Apr3g0033 281 MobiDBLite consensus disorder prediction 81 136 - -
Apr3g0033 281 SUPERFAMILY Homeodomain-like 125 193 IPR009057 -
Apr3g0033 281 CDD homeodomain 136 193 IPR001356 GO:0003677
Apr3g0033 281 ProSitePatterns 'Homeobox' domain signature. 167 190 IPR017970 GO:0000981|GO:0006355
Apr3g0033 281 SMART halz 192 235 IPR003106 GO:0006355|GO:0043565
Apr3g0033 281 Gene3D - 140 190 - -
Apr3g0033 281 ProSiteProfiles 'Homeobox' domain profile. 132 192 IPR001356 GO:0003677
Apr3g0033 281 SMART HOX_1 134 196 IPR001356 GO:0003677
Apr3g0033 281 Pfam Homeodomain 136 190 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0033 Apr-Chr3 580288 581886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0033 1 281 Homeobox Transcription Factor Family AT4G37790 61.017 4.75e-103 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr3g0033 Homeodomain 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0033 K09338 - gmx:100784129 409.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0803 7 15037446 15039507 Apr3g0033 3 580288 581886 PCT