Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0024 ATGAGTTTTGGTTCCTCCAATTCTTCTGATCAGGTTTTGTGTCCTATACCATATATTCAAGAAAGCGAGCTAAAGATGACTCAACTTTCGTCGACCATGTATTTGCCTGAACTTGGAATGGAGGAGCCCACTTTGTTTCATCAATACCCGATGGATTCTTTTGCATTCCAGCTTGATGATCTTGACTTCGAGTCCTTCTCCGCGTCGCCAAAGAGCTATTCCTCTCACAAGCGCTCTTTCCCCGTTGAAAGTCCTCAACAATCTATTGCCCCTTCAAGACCCACCGAGCACCACAAGACTGTGACTACATGGAGTGCTTACGGCAGTGACTTGATAGCTCCCAAGCCTTCTTCCTCTTCGTCTTCCAAAATCATCTCTTTTGAACACTCCAATGCATCTTCAGTTGCTTCCCAACAATTCTACAACACGGATGCCAGTGTGAAGAAGCCTAAAATTGAAACCGGGTGCGGTGAAAACTTGGATTTTGCAGCCTATGAGAATAAAAGTTTTCTAAACTATGATAAACAAGAGAACAAGGCTGCAACTGCAACTACTAGAAACCCAACCCAAGCTCAAGATCATGTAATTGCCGAAAGAAAACGAAGGGAAAAACTCAGCCAGAGGTTCATTGCTCTTTCGGCCATCGTCCCTGGACTCAAAAAGATGGACAAGGCTACAGTTTTGGAGGATGCTATAAAATACGTGAAACAACTACAGGAACGAGTAAATACGCTGGAGGAACGAGTGGCTGATAAAACAGTTGAAAAAGCGGTTTTTGTGAAGAGATCTTTTGTTTGCACTGACGATGGTAGCTCCCCCTCCGATGAGAACTCCGACCAATCATTCCCCGAAATCGAAGCAAGAATTTCCTGTAAAGAGGTACTCATCAGAATCCACTGCAACAAACATAGTGGACGAGTGGCTACTATACTCACCGAATTAGAGAAGCATCATCTCACAGTTCAGAGCAGCAGCTTTTTGCCCTTTGGGAATAACACTCTTGACATAACTATTGTTGCTCAGATGAACAAGGAATATTGCTTGACAGCAAAGGATCTAATAAGAAATTTAAGAGAGTCTTTGAGGAAGTTGATTTGA 1098 0.4317 MSFGSSNSSDQVLCPIPYIQESELKMTQLSSTMYLPELGMEEPTLFHQYPMDSFAFQLDDLDFESFSASPKSYSSHKRSFPVESPQQSIAPSRPTEHHKTVTTWSAYGSDLIAPKPSSSSSSKIISFEHSNASSVASQQFYNTDASVKKPKIETGCGENLDFAAYENKSFLNYDKQENKAATATTRNPTQAQDHVIAERKRREKLSQRFIALSAIVPGLKKMDKATVLEDAIKYVKQLQERVNTLEERVADKTVEKAVFVKRSFVCTDDGSSPSDENSDQSFPEIEARISCKEVLIRIHCNKHSGRVATILTELEKHHLTVQSSSFLPFGNNTLDITIVAQMNKEYCLTAKDLIRNLRESLRKLI* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0024 365 MobiDBLite consensus disorder prediction 73 97 - -
Apr3g0024 365 PANTHER BHLH TRANSCRIPTION FACTOR 26 362 - -
Apr3g0024 365 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 189 238 IPR011598 GO:0046983
Apr3g0024 365 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 193 252 IPR036638 GO:0046983
Apr3g0024 365 Pfam Helix-loop-helix DNA-binding domain 192 239 IPR011598 GO:0046983
Apr3g0024 365 Gene3D - 179 253 IPR036638 GO:0046983
Apr3g0024 365 SMART finulus 195 244 IPR011598 GO:0046983
Apr3g0024 365 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 26 362 - -
Apr3g0024 365 CDD bHLH_AtNAI1_like 191 263 - -
Apr3g0024 365 Coils Coil 228 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0024 Apr-Chr3 435207 437533 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0024 31 365 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.888 1.05e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr3g0024 HLH 9.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0024 - - gmx:100798011 467.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0024 3 435207 437533 Apr3g0024 3 435207 437533 ECH
Apr7g0793 7 14906190 14907688 Apr3g0024 3 435207 437533 PCT