Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0023 ATGGAGGAATCATGGACTAGTTGGTTATGTGATATGGAACCAGATGATTACAGTTTCATCAATCAATCAGACACAAACCTGGATGATGGAAACTTAGCATCTCATCAAGATAGGCTACATGAGGAGAACAAGCAAAACTCACTCTCCACGGAGAGTCACGGCTCTTATGCCACCATGAGCAATTCTTCAGCAGATGAGAGTGGGTTAGAGAGGCCTTCCAAGTCACGAAAGACACCTTCTTCTCCCTGCTCCTTCATTCTTTCATTTGACAACACGAATCCACCACCGCTGAAGGTTGAATCACGCTCCAAGAATGGAACCAAGGTTGTGAATCATGGGATGGCTTTGACTTCAAAGAATGAACCAAGACGCGTTACTCAGGAGACCAAGAAGAAGGGGTCAGGGCTTAGATCTCATTATCCCGCACAAGATCACATCATTGCAGAGAGAATGAGGAGAGAAAAAATTAGCCAGCAGTTCATAGCCCTTTCAGCCCTTATTCCAGACCTCAAAAAGATGGACAAAGCTTCTGTGTTGGGAGACGCTATTAAGTATGTGAAACAGCTAAAGGAGCAAGTGAAAGTGCTTGAGGAGAAGCAGAGCAAAAGGAAAAGCGAGGAATTGGTGGTGTTTGTGAAGAAATCTCAGGTCGTTACTACGGACGAAGATGTCTCGGACACCTCGTCAAATTCCTGCGGATTCGGAAACTCCGATGATCCCTCAAAGACAAATCTGCCACTGCCAGAGGTTGAAGCAAGGGTGTCAAAGAAGAACGTGCTGATTCGAATCCACTGCGAAAAAGAAAAGACAGCGGTTGTTAACATATTTAGAGAGATAGAGAAGCTTCATCTCTCAGTCACCAGTAGCAGTGCCTTTTCTTTCGGTTCCTCTGTTCTCGACATGACCATCGTAGCCGAGATGGAGGATGAATTCAACATGAGCGTGAAGGAACTAGCTAGAAATCTGAGAGTAGGACTGATGCAATTTATGTAG 993 0.4502 MEESWTSWLCDMEPDDYSFINQSDTNLDDGNLASHQDRLHEENKQNSLSTESHGSYATMSNSSADESGLERPSKSRKTPSSPCSFILSFDNTNPPPLKVESRSKNGTKVVNHGMALTSKNEPRRVTQETKKKGSGLRSHYPAQDHIIAERMRREKISQQFIALSALIPDLKKMDKASVLGDAIKYVKQLKEQVKVLEEKQSKRKSEELVVFVKKSQVVTTDEDVSDTSSNSCGFGNSDDPSKTNLPLPEVEARVSKKNVLIRIHCEKEKTAVVNIFREIEKLHLSVTSSSAFSFGSSVLDMTIVAEMEDEFNMSVKELARNLRVGLMQFM* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0023 330 MobiDBLite consensus disorder prediction 222 246 - -
Apr3g0023 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 145 202 IPR036638 GO:0046983
Apr3g0023 330 Pfam Helix-loop-helix DNA-binding domain 144 190 IPR011598 GO:0046983
Apr3g0023 330 MobiDBLite consensus disorder prediction 31 47 - -
Apr3g0023 330 MobiDBLite consensus disorder prediction 222 243 - -
Apr3g0023 330 PANTHER BHLH TRANSCRIPTION FACTOR 1 330 - -
Apr3g0023 330 Coils Coil 179 206 - -
Apr3g0023 330 Gene3D - 140 209 IPR036638 GO:0046983
Apr3g0023 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 140 189 IPR011598 GO:0046983
Apr3g0023 330 MobiDBLite consensus disorder prediction 48 107 - -
Apr3g0023 330 MobiDBLite consensus disorder prediction 20 107 - -
Apr3g0023 330 SMART finulus 146 195 IPR011598 GO:0046983
Apr3g0023 330 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 1 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0023 Apr-Chr3 402175 404000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0023 116 330 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 45.455 3.17e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr3g0023 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0023 - - gmx:100803386 421.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0023 3 402175 404000 Apr3g0023 3 402175 404000 ECH
Apr7g0792 7 14888864 14890706 Apr3g0023 3 402175 404000 PCT