Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0022 ATGGAGGACTTAAACACACCAATGGATGCATCAGCAACCAGCTGGTTATCTGATTTGGATATGGATGATTACAATTTATTTCCTGAGGAATGTCCATTGAATTTTCTTGACGTTGATGAAGAAGAGTTCCTTTCCCATGACATTGCTACTGCTCTGCCGGATCAGACCCTACATCAATCTTTATCTTCTGAGTGCACTTCCAAAACTCTTAGTAACAACTCATCCACTGATGAAACAAGTTTTGACTTTGAGAGACCCTCCAAGATGCTGAAAACAATCAGCACAAGTTCTAACTCATCCACCATCACAAATCTTTCTCCATCATCCTCCTTCTCCTCCTTTCAGTCTCAGATTCTTTCTTTTGACAACCCAAAACCATCCCTTTCCGAGACCAATCACTTTTATGGCTTTGACTGTACCTTAAACCCACCACAGAACGAGATGGTGTCAGTGTCAACACCCCAATTGGGAAATCAGCGTTTCCCAACTCAAAACCCAAAAGGGTCTCCAAAAAATCAAAACTTGGAAACAAAAACCTCACATAGCAAGAGGTCTCCTGCTCACGCTCAGGATCACATCATGGCCGAGAGAAAGCGAAGAGAGAAACTCAGCCAAAGCTTCATTGCTCTTGCAGCTCTTGTTCCTGGCCTAAAAAAGATGGACAAGGCTTCAGTATTAGGGGACGCTATCAAATACGTGAAGGAGCTCAAAGAGCGTCTAGCGGTGCTTGAAGAGCAGAGCAAGAAAACAAGGGCAGAGTCAGTGGTGGTTGTAAACAAGCCAGAGCTCAGTGGCGATGATGATTCTTCATCATGTGATGAGAGCATTGATGCTGATGGTGGCAGCGAATTACTGTTTCAAGTGGAAGTAAGAGTGTCAGGGCAAGAAATGCTGCTTCGGATCCACTGTCAGAAGCAGAAGGGTCTTTTGGTCAAAATCCTTGCACAGATTCAAACCTATCATCTATTGGTTGTGAATAGCAGTGTCTTACCCTTTGGTGATTCCATCCTTGACATAACAATAGTTGCTCAGATGGGCGATGATTACAGGTTGACCACAAAGGAGCTTGTCAAGAACCTACGCGTGGCGGCATTGAAAATAATGTCATAA 1110 0.4378 MEDLNTPMDASATSWLSDLDMDDYNLFPEECPLNFLDVDEEEFLSHDIATALPDQTLHQSLSSECTSKTLSNNSSTDETSFDFERPSKMLKTISTSSNSSTITNLSPSSSFSSFQSQILSFDNPKPSLSETNHFYGFDCTLNPPQNEMVSVSTPQLGNQRFPTQNPKGSPKNQNLETKTSHSKRSPAHAQDHIMAERKRREKLSQSFIALAALVPGLKKMDKASVLGDAIKYVKELKERLAVLEEQSKKTRAESVVVVNKPELSGDDDSSSCDESIDADGGSELLFQVEVRVSGQEMLLRIHCQKQKGLLVKILAQIQTYHLLVVNSSVLPFGDSILDITIVAQMGDDYRLTTKELVKNLRVAALKIMS* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0022 369 PANTHER BHLH TRANSCRIPTION FACTOR 5 369 - -
Apr3g0022 369 Pfam Helix-loop-helix DNA-binding domain 191 236 IPR011598 GO:0046983
Apr3g0022 369 SMART finulus 193 242 IPR011598 GO:0046983
Apr3g0022 369 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 5 369 - -
Apr3g0022 369 CDD bHLH_AtNAI1_like 188 260 - -
Apr3g0022 369 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 187 236 IPR011598 GO:0046983
Apr3g0022 369 Gene3D - 174 253 IPR036638 GO:0046983
Apr3g0022 369 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 192 253 IPR036638 GO:0046983
Apr3g0022 369 MobiDBLite consensus disorder prediction 155 198 - -
Apr3g0022 369 MobiDBLite consensus disorder prediction 155 176 - -
Apr3g0022 369 MobiDBLite consensus disorder prediction 177 198 - -
Apr3g0022 369 Coils Coil 226 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0022 Apr-Chr3 393982 395548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0022 85 363 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.983 2.92e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr3g0022 HLH 4.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0022 - - gmx:100788128 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0022 3 393982 395548 Apr3g0022 3 393982 395548 ECH