Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0017 ATGGCTGGTTTGGATTTAGGAAGCGCTTCACGCTTTGTTCAAAACCTTCACAGACCAGACTTGCACTTGCAACAACAGCAGCAACAGCACCACCCCGATTCGGAAGACCAAGAAACGCCGAACCGCGGAGCGGCGCCGTTTTCAGGCGAAGACGATGACCGAAGCCAAGGCCTGGAGCTAGGCTCGGGTGGACCCGGTGACGTGGTGGGTCGGCGTCCACGTGGCAGGCCACCAGGCTCCAAGAACAAGCCGAAGCCGCCGGTGATCATAACAAGAGAGAGCGCCAACACGCTAAGGGCTCACATCCTCGAAGTCGGAAGCGGCTCCGACGTGTTCGACTGCGTCACCACCTACGCGCGGCGTCGCCAGCGCGGGATCTGTATTCTCAGCGGCAGCGGCACCGTTACCAACGTCAGTCTCCGGCAGCCTGCGGCGGCGGGAGCTGTCGTCACGCTCCACGGACGGTTCGAGATACTCTCGTTGTCGGGCTCGTTCCTGCCGCCGCCGGCTCCTCCGGGGGCGACGAGTCTGACGATATATCTTGCCGGCGGGCAGGGGCAGGTGGTCGGAGGGAGTGTGGTGGGGGAGTTAACGGCGGCCGGGCCGGTGATTGTGATTGCGGCGTCGTTCACGAACGTGGCGTATGAGAGGTTGCCGTTGGATGAGGAGGAACAGCTTCAGATTCAGCCACCAGGTGCGGCGGGGTCTCAGGGTTCCGGTGGCGGTGGTGTTGGGAATAATGGTAACCCTTTCCCTGACCCTTCTTCGGGGCTTCCTTTCTTCAATTTGCCGCTTAATATGCAGAATGTTCAGTTACCTGTGGATGGTTGGGCGGGAAACTCAGCTTCACGTCCACCACCTTTTTGA 867 0.6067 MAGLDLGSASRFVQNLHRPDLHLQQQQQQHHPDSEDQETPNRGAAPFSGEDDDRSQGLELGSGGPGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGSGSDVFDCVTTYARRRQRGICILSGSGTVTNVSLRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTIYLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDEEEQLQIQPPGAAGSQGSGGGGVGNNGNPFPDPSSGLPFFNLPLNMQNVQLPVDGWAGNSASRPPPF* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0017 288 MobiDBLite consensus disorder prediction 230 253 - -
Apr3g0017 288 MobiDBLite consensus disorder prediction 1 89 - -
Apr3g0017 288 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 230 - -
Apr3g0017 288 MobiDBLite consensus disorder prediction 229 262 - -
Apr3g0017 288 ProSiteProfiles PPC domain profile profile. 95 232 IPR005175 -
Apr3g0017 288 CDD DUF296 99 182 IPR005175 -
Apr3g0017 288 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 212 IPR005175 -
Apr3g0017 288 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 1 286 - -
Apr3g0017 288 Gene3D - 98 231 - -
Apr3g0017 288 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 286 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0017 Apr-Chr3 241677 242543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0017 1 286 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 68.710 5.05e-107 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0017 - - pvu:PHAVU_003G230600g 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0017 3 241677 242543 Apr3g0017 3 241677 242543 ECH
Apr7g0787 7 14804998 14805819 Apr3g0017 3 241677 242543 PCT