Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0015 ATGGACTCTCGTGAACCGCCGCCCATCACCGCCTATGCCTCCACCAACGCCTCCTCCATCATCAGCCCTAACTCCAACGCCACCATTATGTCCCCAACCACCGCTCGATTCCCCTTCGCCGCCGTGCCTCCGCCCTCTGAGTCGTTCTCCGCCGCCTCCTACGACGGTTCCTCCTCGCCGATGCGGCCCTGCGCCCTCACCAAGAAGAAGAGGGGGCGTCCCCGGAAGTACTCGCCCGACGGTAACATTGCTCTCGGCTTGGCTCCCACCCACATTTCCCCTTCCGGCGCCGGCGACTCAGCCGGCACGCCGTCTACCGAAGCTCCGGCGAAGAAGCATCGGGGAAGACCTCCGGGGTCCGGGAAGAAGCAGCTTGATGCTTTGGGAGCTGGTGGGGTTGGTTTCACACCTCATGTTATCTTGGTGGACTCTGGCGAGGACATTACAGCAAAAATTATGGCCTTCTCTCAGCAAGGGCCTCGGACTGTTTGCATTCTTTCTGCTAATGGTGCAATCTGCAATGTCACCCTTCGACAGCCCACATTGTCTGGTGGTACTGCAACATATGAGGGACGATTTGAGATTATATCTTTATCAGGTGCTTTGCAGCTATCTGAAAATAATGGGGAACGTAGCAGAACATGTGGTTTGAATGTTTCCCTTGCAGGGTCTGATGGACGTGTTTTGGGTGGCGGAGTTGCTGGAATGCTAACTGCTGCATCACCTGTACAGGTCATTGTGGGTAGCTTTATTGCGGATGGGAAAAAGTCAAGCTCAAATATCCTGAAATCTGGGCCTTCTTCAGGACCAGCATCCTTTGGTGCTCCTATGACTCCAACTAGTCCTACGTCTCAAGGGCCTTCAAGTGACTCCTCTGAGCCCGAGGAAAATGACCATAGTCCTTTTACTAGGGGGTCTGGACTCTACAATAATGCTAGCCAGCCCGTTAATAACATGCCAATATATCATCATCCTCTATGGGCTGGTCAATCTCATCAGTGA 1002 0.5399 MDSREPPPITAYASTNASSIISPNSNATIMSPTTARFPFAAVPPPSESFSAASYDGSSSPMRPCALTKKKRGRPRKYSPDGNIALGLAPTHISPSGAGDSAGTPSTEAPAKKHRGRPPGSGKKQLDALGAGGVGFTPHVILVDSGEDITAKIMAFSQQGPRTVCILSANGAICNVTLRQPTLSGGTATYEGRFEIISLSGALQLSENNGERSRTCGLNVSLAGSDGRVLGGGVAGMLTAASPVQVIVGSFIADGKKSSSNILKSGPSSGPASFGAPMTPTSPTSQGPSSDSSEPEENDHSPFTRGSGLYNNASQPVNNMPIYHHPLWAGQSHQ* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0015 333 MobiDBLite consensus disorder prediction 303 318 - -
Apr3g0015 333 MobiDBLite consensus disorder prediction 9 23 - -
Apr3g0015 333 Gene3D - 137 262 - -
Apr3g0015 333 MobiDBLite consensus disorder prediction 261 333 - -
Apr3g0015 333 MobiDBLite consensus disorder prediction 42 124 - -
Apr3g0015 333 MobiDBLite consensus disorder prediction 1 23 - -
Apr3g0015 333 MobiDBLite consensus disorder prediction 261 291 - -
Apr3g0015 333 Pfam Plants and Prokaryotes Conserved (PCC) domain 137 250 IPR005175 -
Apr3g0015 333 ProSiteProfiles PPC domain profile profile. 131 276 IPR005175 -
Apr3g0015 333 SMART AT_hook_2 68 80 IPR017956 GO:0003677
Apr3g0015 333 SMART AT_hook_2 111 123 IPR017956 GO:0003677
Apr3g0015 333 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 54 331 IPR039605 GO:0003680
Apr3g0015 333 SUPERFAMILY AF0104/ALDC/Ptd012-like 135 251 - -
Apr3g0015 333 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 13-LIKE ISOFORM X1 54 331 - -
Apr3g0015 333 CDD DUF296 136 250 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0015 Apr-Chr3 217414 222103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0015 67 292 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 56.485 4.41e-75 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0015 - - var:108323770 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0015 3 217414 222103 Apr3g0015 3 217414 222103 ECH
Apr7g0785 7 14776719 14781134 Apr3g0015 3 217414 222103 PCT