Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Apr3g0010 | ATGTATAATGAATGTGCACAGAGTCAACTTGTCTGTTCTGGGTGTAGAAACCTTCTAGTGTATCCAGTTGGAGCCACCTCTGTGTGCTGTGCTGTTTGCAATGCAGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCCCAGTTAGTTTGTGGAGGTTGCCATACTTTACTCATGTACATCCGTGGAGCAACAAGTGTGCAATGTTCTTGTTGTCACACAGTCAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCAATTGTGGGAACTGCAGGATGCTACTCATGTACCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTAACATCGGTTGGGGCCTCAGCAAGCACCACTGAGCAGAAGTTCAGCACCTAA | 390 | 0.4667 | MYNECAQSQLVCSGCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASASTTEQKFST* | 130 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Apr3g0010 | 129 | TIGRFAM | LSD1: zinc finger domain, LSD1 subclass | 86 | 116 | IPR005735 | - | |
Apr3g0010 | 129 | TIGRFAM | LSD1: zinc finger domain, LSD1 subclass | 9 | 39 | IPR005735 | - | |
Apr3g0010 | 129 | TIGRFAM | LSD1: zinc finger domain, LSD1 subclass | 48 | 77 | IPR005735 | - | |
Apr3g0010 | 129 | Pfam | LSD1 zinc finger | 51 | 75 | IPR005735 | - | |
Apr3g0010 | 129 | Pfam | LSD1 zinc finger | 89 | 113 | IPR005735 | - | |
Apr3g0010 | 129 | Pfam | LSD1 zinc finger | 12 | 36 | IPR005735 | - | |
Apr3g0010 | 129 | PANTHER | PROTEIN LOL1 | 3 | 126 | - | - | |
Apr3g0010 | 129 | PANTHER | PROTEIN LSD1 | 3 | 126 | IPR040319 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Apr3g0010 | Apr-Chr3 | 164181 | 166718 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2C2-LSD | Apr3g0010 | zf-LSD1 | 1.1e-10 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Apr3g0010 | - | - | qsu:112000975 | 249.595 |