Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0010 ATGTATAATGAATGTGCACAGAGTCAACTTGTCTGTTCTGGGTGTAGAAACCTTCTAGTGTATCCAGTTGGAGCCACCTCTGTGTGCTGTGCTGTTTGCAATGCAGTCACAGCAGTGCCACCTCCTGGCACAGAAATGGCCCAGTTAGTTTGTGGAGGTTGCCATACTTTACTCATGTACATCCGTGGAGCAACAAGTGTGCAATGTTCTTGTTGTCACACAGTCAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCAATTGTGGGAACTGCAGGATGCTACTCATGTACCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTAACATCGGTTGGGGCCTCAGCAAGCACCACTGAGCAGAAGTTCAGCACCTAA 390 0.4667 MYNECAQSQLVCSGCRNLLVYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGASASTTEQKFST* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0010 129 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 86 116 IPR005735 -
Apr3g0010 129 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 9 39 IPR005735 -
Apr3g0010 129 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 48 77 IPR005735 -
Apr3g0010 129 Pfam LSD1 zinc finger 51 75 IPR005735 -
Apr3g0010 129 Pfam LSD1 zinc finger 89 113 IPR005735 -
Apr3g0010 129 Pfam LSD1 zinc finger 12 36 IPR005735 -
Apr3g0010 129 PANTHER PROTEIN LOL1 3 126 - -
Apr3g0010 129 PANTHER PROTEIN LSD1 3 126 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0010 Apr-Chr3 164181 166718 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Apr3g0010 zf-LSD1 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0010 - - qsu:112000975 249.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0010 3 164181 166718 Apr3g0010 3 164181 166718 ECH
Apr7g0782 7 14753873 14758173 Apr3g0010 3 164181 166718 PCT