Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0007 ATGGGTTGCACGATGAGAGAAAAGCACATCAGAGCTAATCGGAGACCTCGATCGGTGAAACCCGATTCCGATTCATGCGATAAGGACGCAATATCCAAATCTATTGCCGAGTCTGGTCTCAAACCCTTCAAATACCATCTGGGTCCCAACGATTCTTCTCAGAACGCAAATTCCAATCCAAACCCTAACCCTAACGTTGAGGAAACCGGGTGGGGTTACTGTACAGAGGAACAATTGGAAGAGATTCTGTTGAAAAATTTGGAATTTATATACAACGAAGCTGTGTCAAAGCTTGTTGCTTTGGGTTATGATGAGGATGTTGCCATGAAAGCCATACTGAGAAATGGGCATTGCTATGGTGGCATGGATGTGTTGACAAACATCTTGCACAACTCTATAGCGTTTTTGAATAGCAATGGTGATGGTGGGGGAGGCTGTAATAATGGTGGAAACTTAGATGAGTCTGAGCCTGTGTTCTCTGACTTGAGGCAGTTGGAAGAGTACTCATTGGCGGGTATGGTGTGTTTGTTGCAACAAGTGAGGCCTCATTTGAGCAAAGGTGATGCAATGTGGTGTTTGCTCATGAGTGATCTTCATGTTGGTAGAGCTAGTAGCATGGAAATTCCGGTGCCAGGCAATGGATGTCCTGCTGCCACCGCCCCGGCCACTGTTGAGGCCGGTGGCAATTCAGTTGGCGTCATGGCTCCAGCTCTATGTAGGTTTCATGGGGGTTGGGGATTTGGTGATGGGGGAGGGTTGGATTTTCCTGTGAATGGGATATTCTCTTGTGGTGCAGAGATGAATTTGCAGCTGCAAAGAGATATTGAATTCCCGAAGAGGTTTAATCTTTCTCCTTCCATGAAGTCCTTGTTGAAGAGAAATGTGGCTATGTTTGCTGCTGGTTTTAGGGCAAACTCTAAGCAGTTGCAGACGCATGCGAAGGCCTTTCCTGGCCGGAGTTCTGCGTCTAATGTGGATTCTTTGGCTGTATCTGGGGCGGAAGTCCATGCTGAGCAGTCTGGAGATTCACAGAATCTCGATAACCAAGATGCAGTGAATTCGGTGCTGAGTAAATTTCGTGATTTGAATCTTGATGAGAATTTGGAACTTGTGGCAGAAGATCAGAAGGATGAGCTGATAGTTAATTTATTTCATCAAATTAAAGATCTTGAGAAGCAGGTCAAGGAGCGAAAAGATTGGGCACATCAGAAGGCAATGCAGGCCGCGAGAAAGCTAAGCAGTGATCTAACTGAGCTGAAAATGTTACGGATGGAAAGAGAGGAGACTCAAAAATTGAAGAAAGGGAAACAGGCACTTGAGGACACGACGATGAAGAGACTCTCGGAGATGGAGAATGCTTTGAGAAAGGCTAGTGGTCAAGTGGACCGTGCAAATGCAGCTGTTAGAAGACTAGAAACAGAAAATGCAGAAATCAAAGCAGAAATGGAGGCTTCCAAATTAAGTGCATCAGAGTCAGTAACAGCTTGCTTAGAAGTTGCAAAAAGGGAGAAAAAATGTTTAAAGAAACTTCTAGCTTGGGAAAAACAGAAAGCTAAACTGCAGCAAGAGATTTCTGATGAAAAAGAGAAGATATTGGAGACACAAGAAATATTAGTTCAGATTAGACAGGCTCAAAAAGATGCTGAGGTTAAGTGGAAGGAGGAGTTGAAGGCTAAAGAGGAAGCCTTAGCGCTAGTTGAGGAGGAGCGCCGGTCTAAGGAAGCAGCTGAGTCTAATAATAAGAGGAAGCTCGAGGCTTTGCGTCTGAAGATAGAGATAGATTTCCAGCGGCACAAGGATGATCTACTAAGACTTGAGCAGGAGCTTTCGCGCCTTAAAGCATCTGCTCAGTCTGCAGAGTTGCATCACCAATCAAACACTTCACCTATCAGTGACCTTGAGGGTGCAAAGCCTAAAAGAGAGACAATTGCTAGGCTGCTCCAAGAATTAGATAATCTGGAGGATTTTTCAGAGAAAGAAGTGAACAGACACAGGGAGTGCATTATATGTATGAAAGATGAAGTCTCCATTGTTTTCTTGCCGTGTGCGCACCAAGTCATGTGTGCTAGTTGCAGTGATGAGTATGGAAGAAAGGGTAAGGCTGTTTGTCCTTGCTGCCGGGTTCAAATCCAACAGAGAATCCGTGTATTTGGGGCAAGTTCTTAG 2166 0.4488 MGCTMREKHIRANRRPRSVKPDSDSCDKDAISKSIAESGLKPFKYHLGPNDSSQNANSNPNPNPNVEETGWGYCTEEQLEEILLKNLEFIYNEAVSKLVALGYDEDVAMKAILRNGHCYGGMDVLTNILHNSIAFLNSNGDGGGGCNNGGNLDESEPVFSDLRQLEEYSLAGMVCLLQQVRPHLSKGDAMWCLLMSDLHVGRASSMEIPVPGNGCPAATAPATVEAGGNSVGVMAPALCRFHGGWGFGDGGGLDFPVNGIFSCGAEMNLQLQRDIEFPKRFNLSPSMKSLLKRNVAMFAAGFRANSKQLQTHAKAFPGRSSASNVDSLAVSGAEVHAEQSGDSQNLDNQDAVNSVLSKFRDLNLDENLELVAEDQKDELIVNLFHQIKDLEKQVKERKDWAHQKAMQAARKLSSDLTELKMLRMEREETQKLKKGKQALEDTTMKRLSEMENALRKASGQVDRANAAVRRLETENAEIKAEMEASKLSASESVTACLEVAKREKKCLKKLLAWEKQKAKLQQEISDEKEKILETQEILVQIRQAQKDAEVKWKEELKAKEEALALVEEERRSKEAAESNNKRKLEALRLKIEIDFQRHKDDLLRLEQELSRLKASAQSAELHHQSNTSPISDLEGAKPKRETIARLLQELDNLEDFSEKEVNRHRECIICMKDEVSIVFLPCAHQVMCASCSDEYGRKGKAVCPCCRVQIQQRIRVFGASS* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0007 721 Coils Coil 595 622 - -
Apr3g0007 721 MobiDBLite consensus disorder prediction 616 635 - -
Apr3g0007 721 PANTHER OS05G0141500 PROTEIN 1 720 IPR046934 -
Apr3g0007 721 Coils Coil 503 537 - -
Apr3g0007 721 MobiDBLite consensus disorder prediction 616 632 - -
Apr3g0007 721 MobiDBLite consensus disorder prediction 1 70 - -
Apr3g0007 721 MobiDBLite consensus disorder prediction 16 31 - -
Apr3g0007 721 Coils Coil 447 488 - -
Apr3g0007 721 Coils Coil 549 586 - -
Apr3g0007 721 Pfam Zinc finger, C3HC4 type (RING finger) 664 712 - -
Apr3g0007 721 SUPERFAMILY RING/U-box 645 713 - -
Apr3g0007 721 ProSiteProfiles Zinc finger RING-type profile. 667 707 IPR001841 -
Apr3g0007 721 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 652 718 IPR013083 -
Apr3g0007 721 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 720 - -
Apr3g0007 721 Coils Coil 643 663 - -
Apr3g0007 721 Pfam Family of unknown function (DUF6592) 86 206 IPR046527 -
Apr3g0007 721 MobiDBLite consensus disorder prediction 48 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0007 Apr-Chr3 129790 137944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0007 638 717 C3H Transcription Factor Family AT1G73950 35.556 1.21e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0007 - - gmx:100777787 1214.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr3g0007 3 129790 137944 Apr3g0007 3 129790 137944 ECH
Apr7g0781 7 14741098 14744357 Apr3g0007 3 129790 137944 PCT