Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0002 ATGGCAAAACCTATACCAAAAATGGGTTCGCGTAAAAATGGACGTATTGGTTCGCGTAAGCATGCTCATAAAATACCAAAGGGAGTTATTCATGTTCAAGCTAGTTTTAACAATACTATTGTGACTGTTACAGATGTACGTGGTCGGGTTATTTCTTGGTCCTCCGCCGGTACTTGTGGATTCAAGGGTACACGAAGGGGTACACCATTTGCCGCTCAAACCGCAGCAGGAAATGCTATTCGAACAGTAGCGGATCAAGGCATGCAACGAGCAGAAGTCATGATAAAAGGCCCCGGTCTCGGAAGAGATGCGGCATTAAGAGCTATTCGTAGAAGTGGTATACTATTAAATTTTATACGGGATGTAACCCCTATGCCACATAATGGATGTAGGTCTCCGAAAAAAAGACGTTGGAAGTGTGTTGAATCAAGAGTAGACAGTAAACGTCTTTATTATGGACGCTTTATTCTGTCTCCACTTATGAAAGGCCAAGCCGATACAATAGGCATTGCAGTGCGAAGAGTTTTGCTAGGAGAAATAGAGGGAACATGTATTACACGTGCAAAATCGGAGAAAATACCACATGAATATTCTACCATAGTAGGTATTCAAGAATCAGTACATGAAATTTTAATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTGTATGGAACTCAAGACGCATCTATTTGTTTCAAAGGTCCTGGATATATAACTGCTCAAGACATCATTTTACCACCTTCTGTGGAAATCATTGATAATACACAACATATAGCCAACCTAACAGAACCTATTAATTTGTGTATTGGATTAAAAATTGAGAGGAATCGCGGATATCGTATAAAAACACTAAAAAACTTTCAAGACGGAAGTTTTCCCATAGATGCTGTATTCATGCCTGTTCGAAATGTAAATCATAGTATTCATTCCTATGGGAATGGGAAAAAAAAACAAGAGATACTCTTTCTCGAAATATGGACAAATGGGAAAGAAGATCCCTTTCATTTAGAAAAAAATCAACACAAGGTTACTTTACCCCTTTTTACTTTTCATGATATATTGGCTAAGGATAAACTGAGGAAAAATAAAAAAGGAATAGCATTGAAATCCATTTTTATTGACCAATTAGAATTGCCTCCCAAGATCTATAATTGTCTCAAAAGATCCAATATTCATACATTATTAGAACTTTTGAATAATAGTCAAGAAGACCTTATGGAAATGGAACATTTTCGTGTAGAAGATGTAAAACATATATTAGACATTTTAGAAATAGAAAAGCATTTCGCATAA 1296 0.3611 MAKPIPKMGSRKNGRIGSRKHAHKIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFIRDVTPMPHNGCRSPKKRRWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAVRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTQDASICFKGPGYITAQDIILPPSVEIIDNTQHIANLTEPINLCIGLKIERNRGYRIKTLKNFQDGSFPIDAVFMPVRNVNHSIHSYGNGKKKQEILFLEIWTNGKEDPFHLEKNQHKVTLPLFTFHDILAKDKLRKNKKGIALKSIFIDQLELPPKIYNCLKRSNIHTLLELLNNSQEDLMEMEHFRVEDVKHILDILEIEKHFA* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0002 431 Pfam Bacterial RNA polymerase, alpha chain C terminal domain 365 425 IPR011260 GO:0003677|GO:0003899|GO:0006351
Apr3g0002 431 Gene3D Ribosomal protein S11 10 139 IPR036967 GO:0003735|GO:0005840|GO:0006412
Apr3g0002 431 SUPERFAMILY Translational machinery components 24 139 - -
Apr3g0002 431 TIGRFAM rpoA: DNA-directed RNA polymerase, alpha subunit 152 425 IPR011773 GO:0003677|GO:0003899|GO:0006351
Apr3g0002 431 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA 138 429 IPR011773 GO:0003677|GO:0003899|GO:0006351
Apr3g0002 431 TIGRFAM uS11_bact: ribosomal protein uS11 20 135 IPR019981 GO:0003735|GO:0005840|GO:0006412
Apr3g0002 431 CDD RNAP_alpha_NTD 143 330 - -
Apr3g0002 431 Pfam RNA polymerase Rpb3/RpoA insert domain 189 281 IPR011262 GO:0003899|GO:0006351|GO:0046983
Apr3g0002 431 Gene3D - 152 334 IPR036603 GO:0006351|GO:0046983
Apr3g0002 431 SUPERFAMILY C-terminal domain of RNA polymerase alpha subunit 368 425 - -
Apr3g0002 431 Pfam Ribosomal protein S11 28 137 IPR001971 GO:0003735|GO:0005840|GO:0006412
Apr3g0002 431 SMART rpoldneu2 152 338 IPR011263 GO:0003899|GO:0006351
Apr3g0002 431 SUPERFAMILY RBP11-like subunits of RNA polymerase 136 335 IPR036603 GO:0006351|GO:0046983
Apr3g0002 431 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 182 300 IPR036643 -
Apr3g0002 431 Gene3D - 182 299 IPR036643 -
Apr3g0002 431 MobiDBLite consensus disorder prediction 1 22 - -
Apr3g0002 431 ProSitePatterns Ribosomal protein S11 signature. 106 128 IPR018102 -
Apr3g0002 431 Hamap 30S ribosomal protein S11 [rpsK]. 7 138 IPR001971 GO:0003735|GO:0005840|GO:0006412
Apr3g0002 431 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 158 334 IPR011263 GO:0003899|GO:0006351
Apr3g0002 431 Gene3D - 369 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0002 Apr-Chr3 34644 36159 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0002 28 128 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 37.273 1.87e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0002 K03040 - psom:113275326 574.704