Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr3g0001 ATGGGATTTCCAAAGTTATTAATAGAGGGTAAGCTGGAAGAATTACAGACGAATATGCAAAAAAAACTGAATTGTGTGAACCGAAAACTTAACATTGCTATTACAAGAATTGCAAATGCTTATAAACATCCTAATATTCTTGCAGAATTTATAGCCGGACAATTAAAAAATAGAGTTTCGTTTCGTAAAGCAATGAAAAAAGCTATTGAATTAACTGAACAAGCAGGTACAAAAGGAGTGCAAGTACAAATTGCGGGACGTATCGATGGAAAAGAAATTGCACGTATCGAATGGATCAGAGAAGGTAGGGTTCCTCTACAAACCATTCGAGCTAAAATTGATTATTGTTCCTATACAGTTCGAACTATTTATGGGGCACTTGAGCCCGCTTGGATCACGTCTAGACAAATAGAAGCGGGACGGCGAGCAATGTCACGAAATGTCCGACGAGGTGGACAAATATGGGTACGCATATTTCCAGACAAACCAGTTACAGTAAGACCCACCGAAACGCGTATGGGTTCGGGAAAAGGATCTCCCGAATATTGGGTATCTGTCGTTAAACCTGGGAAAATACTTTATGAGATGGCTGATAACAGCGGAGCCCGCGAATTGATGTGTATTCGAATCCTAGGAGCTAGTAATCGACGATATGCTTATATTGGTGACATTGTTGTTGCTGTAATCAAGGAAGCAGTACCAAATATGACCTTAGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGTAGCAACGGTATACTAATTCAGTATGATGATAATGCTGCAGTTGTCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATCTTTTGTGCAATCGCACGGGAATTGAGACAGTTAAATTTCACTAAAATAGTTTCATTAGCACCCGAGGTATTATAA 927 0.3894 MGFPKLLIEGKLEELQTNMQKKLNCVNRKLNIAITRIANAYKHPNILAEFIAGQLKNRVSFRKAMKKAIELTEQAGTKGVQVQIAGRIDGKEIARIEWIREGRVPLQTIRAKIDYCSYTVRTIYGALEPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVSVVKPGKILYEMADNSGARELMCIRILGASNRRYAYIGDIVVAVIKEAVPNMTLERSEVIRAVIVRTCKELKRSNGILIQYDDNAAVVIDQEGNPKGTRIFCAIARELRQLNFTKIVSLAPEVL* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr3g0001 308 ProSitePatterns Ribosomal protein L14 signature. 246 272 IPR019972 -
Apr3g0001 308 SMART Ribosomal_L14_2 192 308 IPR000218 GO:0003735|GO:0005840|GO:0006412
Apr3g0001 308 Pfam Ribosomal protein L16p/L10e 126 204 IPR016180 GO:0003735|GO:0005840|GO:0006412
Apr3g0001 308 Pfam Ribosomal protein L14p/L23e 195 308 IPR000218 GO:0003735|GO:0005840|GO:0006412
Apr3g0001 308 ProSitePatterns Ribosomal protein L16 signature 2. 172 183 IPR020798 GO:0003735|GO:0005840|GO:0006412
Apr3g0001 308 CDD Ribosomal_L16_L10e 126 196 IPR016180 GO:0003735|GO:0005840|GO:0006412
Apr3g0001 308 TIGRFAM rpsC_bact: ribosomal protein uS3 4 128 IPR005704 GO:0003735|GO:0006412
Apr3g0001 308 ProSitePatterns Ribosomal protein L16 signature 1. 149 160 IPR020798 GO:0003735|GO:0005840|GO:0006412
Apr3g0001 308 PANTHER 30S RIBOSOMAL PROTEIN S3, CHLOROPLASTIC 3 133 - -
Apr3g0001 308 TIGRFAM rplP_bact: ribosomal protein uL16 111 198 IPR000114 GO:0003735|GO:0006412|GO:0019843
Apr3g0001 308 Gene3D Ribosomal protein L14 178 308 IPR036853 GO:0003735|GO:0005840|GO:0006412
Apr3g0001 308 PRINTS Ribosomal protein L16 signature 132 143 IPR000114 GO:0003735|GO:0006412|GO:0019843
Apr3g0001 308 PRINTS Ribosomal protein L16 signature 148 177 IPR000114 GO:0003735|GO:0006412|GO:0019843
Apr3g0001 308 PRINTS Ribosomal protein L16 signature 178 207 IPR000114 GO:0003735|GO:0006412|GO:0019843
Apr3g0001 308 Gene3D - 40 128 IPR036419 -
Apr3g0001 308 Pfam Ribosomal protein S3, C-terminal domain 51 126 IPR001351 GO:0003735|GO:0006412
Apr3g0001 308 Hamap 50S ribosomal protein L14 [rplN]. 186 308 IPR000218 GO:0003735|GO:0005840|GO:0006412
Apr3g0001 308 TIGRFAM rplN_bact: ribosomal protein uL14 195 308 IPR005745 GO:0003735|GO:0006412|GO:0015934
Apr3g0001 308 SUPERFAMILY Ribosomal protein S3 C-terminal domain 39 126 IPR036419 -
Apr3g0001 308 SUPERFAMILY Ribosomal protein L16p/L10e 126 198 IPR036920 GO:0003735|GO:0005840|GO:0006412
Apr3g0001 308 SUPERFAMILY Ribosomal protein L14 196 308 IPR036853 GO:0003735|GO:0005840|GO:0006412
Apr3g0001 308 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 3 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr3g0001 Apr-Chr3 30414 33933 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr3g0001 175 308 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 31.159 2.98e-14 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr3g0001 K02982 K02874 dct:114579343 263.848