Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr369g0001 ATGAAAGGAATATCCTATCGAGGTAATAATATTTGCTTCGGAAGATATGCTCTTCAGGCACTTGAGCCCGCTTGGATCACGTCTAGACAAATAGAAGCGGGACGGCGAGCAATGTCACGAAATGTCCGACGAGGTGGACAAATATGGGTACGCATATTTCCAGACAAACCAGTTACAGTAAGACCCACCGAAACGCGTATGGGTTCGGGAAAAGGATCTCCCGAATATTGGGTATCTGTCGTTAAACCTGGGAAAATACTTTATGAGATGGCTGATAACAGCGGAGCCCGCGAATTGATGTGTATTCGAATCCTAGGAGCTAGTAATCGACGATATGCTTATATTGGTGACATTGTTGTTGCTGTAATCAAGGAAGCAGTACCAAATATGACCTTAGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGTAGCAACGGTATACTAATTCAGTATGATGATAATGCTGCAGTTGTCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATCTTTTGTGCAATCGCACGGGAATTGAGACAGTTAAATTTCACTAAAATAGTTTCATTAGCACCCGAGATGTACGTGGTCGGGTTATTTCTTGGTCCTCCGCCGGTACTTGTGGATTCAAGGGTACACGAAGGGGTACACCATTTGCCGCTCAAACCGCAGCAGGAAATGCTATTCGAACAGTAG 717 0.4338 MKGISYRGNNICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVSVVKPGKILYEMADNSGARELMCIRILGASNRRYAYIGDIVVAVIKEAVPNMTLERSEVIRAVIVRTCKELKRSNGILIQYDDNAAVVIDQEGNPKGTRIFCAIARELRQLNFTKIVSLAPEMYVVGLFLGPPPVLVDSRVHEGVHHLPLKPQQEMLFEQ* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr369g0001 238 Hamap 50S ribosomal protein L14 [rplN]. 80 202 IPR000218 GO:0003735|GO:0005840|GO:0006412
Apr369g0001 238 Pfam Ribosomal protein L14p/L23e 89 201 IPR000218 GO:0003735|GO:0005840|GO:0006412
Apr369g0001 238 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 88 203 IPR000218 GO:0003735|GO:0005840|GO:0006412
Apr369g0001 238 TIGRFAM rplP_bact: ribosomal protein uL16 1 92 IPR000114 GO:0003735|GO:0006412|GO:0019843
Apr369g0001 238 PRINTS Ribosomal protein L16 signature 8 20 IPR000114 GO:0003735|GO:0006412|GO:0019843
Apr369g0001 238 PRINTS Ribosomal protein L16 signature 26 37 IPR000114 GO:0003735|GO:0006412|GO:0019843
Apr369g0001 238 PRINTS Ribosomal protein L16 signature 42 71 IPR000114 GO:0003735|GO:0006412|GO:0019843
Apr369g0001 238 PRINTS Ribosomal protein L16 signature 72 101 IPR000114 GO:0003735|GO:0006412|GO:0019843
Apr369g0001 238 PANTHER 50S RIBOSOMAL PROTEIN L14, CHLOROPLASTIC 88 203 - -
Apr369g0001 238 ProSitePatterns Ribosomal protein L14 signature. 140 166 IPR019972 -
Apr369g0001 238 SUPERFAMILY Ribosomal protein L14 90 200 IPR036853 GO:0003735|GO:0005840|GO:0006412
Apr369g0001 238 SUPERFAMILY Ribosomal protein L16p/L10e 1 92 IPR036920 GO:0003735|GO:0005840|GO:0006412
Apr369g0001 238 ProSitePatterns Ribosomal protein L16 signature 2. 66 77 IPR020798 GO:0003735|GO:0005840|GO:0006412
Apr369g0001 238 TIGRFAM rplN_bact: ribosomal protein uL14 89 201 IPR005745 GO:0003735|GO:0006412|GO:0015934
Apr369g0001 238 CDD Ribosomal_L16_L10e 7 90 IPR016180 GO:0003735|GO:0005840|GO:0006412
Apr369g0001 238 Gene3D Ribosomal protein L14 71 202 IPR036853 GO:0003735|GO:0005840|GO:0006412
Apr369g0001 238 Pfam Ribosomal protein L16p/L10e 2 98 IPR016180 GO:0003735|GO:0005840|GO:0006412
Apr369g0001 238 ProSitePatterns Ribosomal protein L16 signature 1. 43 54 IPR020798 GO:0003735|GO:0005840|GO:0006412
Apr369g0001 238 SMART Ribosomal_L14_2 86 202 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr369g0001 70 198 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 32.331 2.12e-14 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr369g0001 K02874 - dct:114579343 295.819