Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr351g0191 ATGGATGGTATTCATGGGGGTGACTCTCGGATACACATCAGTGATGGACAGCATCCTATGCATGTGCCATATGTGCAAGAGCATGAGCACCATGGATTGCACCATATGAGCAATGGGAATGGGATTGAGGATGATCCAAACGATGGCGGTGATACTAACTGTGGGGGAAGTGATAGTGTGGAAGGTGAAGTCCCATCCAACCATGGAAATCTCTCTGACAACCACACTGTAATGATGGATCAAGGGAGTGATGGTGGGGATCAGCTTACATTATCTTTTCAGGGCCAGGTTTATGTCTTTGATTCTGTGTCGCCAGAAAAGGTTCAAGCTGTACTACTGTTACTGGGAGGCCGTGAAATACCTCCAACTGTGCCTGCCATCCCAGTATCTCCTCACCATAACAACCGGGGATTTTCTGGTACTCCCCAAAAGTTCAGTGTCCCTCAGAGATTAGCTTCATTGATTAGATTTCGTGAAAAGCGGAAGGAAAGAAATTTTGACAAAAAAATTCGATATAATGTTCGTAAAGAAGTAGCTTTAAGGATGCAAAGGAATAAAGGTCAGTTTACATCTTCGAAGTCCAATCAAGATGAATCGGCAACAGCTGCAACAAATTGGGGAACAAATGAAAACTGGACCTCAGACAATAATGGATCCCAGCAGCAAGATATTGTTTGTAGGCACTGTGGCATCAGTGAGAAATGCACACCAATGATGCGACGTGGGCCTGAAGGGCCAAGAACCCTCTGCAATGCTTGTGGACTTATGTGGGCAAATAAGGGAACCCTGAGGGACCTATCAAGGGCAGCACCCATATCTGGACATAATTCCTCTTTAAACAAGAATGAGAATAAAAATTTAGAGGCCAATCAGATAGTCCACAGAGTTGCTGGAGATGCTGATGATTCGTCTTGA 915 0.447 MDGIHGGDSRIHISDGQHPMHVPYVQEHEHHGLHHMSNGNGIEDDPNDGGDTNCGGSDSVEGEVPSNHGNLSDNHTVMMDQGSDGGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREIPPTVPAIPVSPHHNNRGFSGTPQKFSVPQRLASLIRFREKRKERNFDKKIRYNVRKEVALRMQRNKGQFTSSKSNQDESATAATNWGTNENWTSDNNGSQQQDIVCRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLSRAAPISGHNSSLNKNENKNLEANQIVHRVAGDADDSS* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr351g0191 304 Pfam GATA zinc finger 226 262 IPR000679 GO:0006355|GO:0043565
Apr351g0191 304 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 221 283 - -
Apr351g0191 304 MobiDBLite consensus disorder prediction 187 219 - -
Apr351g0191 304 PANTHER GATA TRANSCRIPTION FACTOR 24 2 291 - -
Apr351g0191 304 CDD ZnF_GATA 225 267 IPR000679 GO:0006355|GO:0043565
Apr351g0191 304 SMART GATA_3 220 273 IPR000679 GO:0006355|GO:0043565
Apr351g0191 304 ProSitePatterns GATA-type zinc finger domain. 226 253 IPR000679 GO:0006355|GO:0043565
Apr351g0191 304 ProSiteProfiles Tify domain profile. 82 117 IPR010399 -
Apr351g0191 304 SMART tify_2 82 117 IPR010399 -
Apr351g0191 304 MobiDBLite consensus disorder prediction 59 83 - -
Apr351g0191 304 ProSiteProfiles CCT domain profile. 150 192 IPR010402 GO:0005515
Apr351g0191 304 MobiDBLite consensus disorder prediction 30 83 - -
Apr351g0191 304 Gene3D - 216 285 IPR013088 GO:0006355|GO:0008270
Apr351g0191 304 Pfam tify domain 87 116 IPR010399 -
Apr351g0191 304 Pfam CCT motif 150 192 IPR010402 GO:0005515
Apr351g0191 304 PANTHER GATA TRANSCRIPTION FACTOR 28 2 291 IPR045280 GO:0006355
Apr351g0191 304 ProSiteProfiles GATA-type zinc finger domain profile. 220 268 IPR000679 GO:0006355|GO:0043565
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr351g0191 1 303 Tify Gene Family AT1G51600 63.844 5.41e-140 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Apr351g0191 CCT 4.9e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr351g0191 - - gmx:100812262 565.844