Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr351g0066 ATGGCCAAAGAAGGTCTTGGACTTGAAATCACTGAGCTAAGGTTGGGTCTGCCCGGTGGAGAACCTACAAGTGTGGTGAATAAGAATGAGAAGAAAAGGGTGTTCTCGGAGATTGAGGGTGTCGGCGATGAAAATAGCTGCTCCGGCGACCAGAAAATAGAGAAGAAGAATCAAGTGGTGGGGTGGCCTCCGGTGTGCTCTTACCGGAAGAAGAACAGCATGAACGAAGCTTCAAAAATGTACGTCAAAGTTAGCATGGATGGGGCTCCCTTCTTGCGTAAAGTTGATCTTGGTATGCATAAGGGATACTCGGAGTTAGCCTTGGCTTTGGAGAAACTCTTTGGTTGCTATGGAATGGTGGAGGCATTGAAGAATGCGGACAATTCTGAACACGTTCCCATTTATGAGGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTCCCTTGGGAAATGTTTATTGAGTCATGCAAGAGGCTGAGGATTATGAAGAGATCAGATGCGAAGGGCTTTGGTCTTCAACCAAAAGGATCTTTAAAGGGATTCATAGAAGGAGTGGCAAAATGA 567 0.4621 MAKEGLGLEITELRLGLPGGEPTSVVNKNEKKRVFSEIEGVGDENSCSGDQKIEKKNQVVGWPPVCSYRKKNSMNEASKMYVKVSMDGAPFLRKVDLGMHKGYSELALALEKLFGCYGMVEALKNADNSEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFGLQPKGSLKGFIEGVAK* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr351g0066 188 Gene3D - 73 176 - -
Apr351g0066 188 ProSiteProfiles PB1 domain profile. 79 167 IPR000270 GO:0005515
Apr351g0066 188 Pfam AUX/IAA family 46 171 IPR033389 -
Apr351g0066 188 PANTHER AUXIN-RESPONSIVE PROTEIN IAA6 4 171 - -
Apr351g0066 188 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 171 IPR003311 GO:0005634|GO:0006355
Apr351g0066 188 SUPERFAMILY CAD & PB1 domains 72 164 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr351g0066 54 169 B3 DNA Binding Superfamily AT4G23980 37.069 8.76e-12 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Apr351g0066 AUX_IAA 5.6e-46 CL0072