Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr351g0028 ATGGGCGTGGACATGTCCAACAACAAACCACCTCACACCAAAGACTTGTTTTCCTCTCCAGCTCTCTCTCTTAGCCTAGCTGGGATTTTCCGGCATGGTGCGGAGGCGCCAGAGACGTCGAGCATGGAGGTGGTCGGCGATGAGGTCCGGCGAGAGGACACTGTTGAGATTAGTAGCGACAACTCAGGACCCGTGAGATCGAGGTCCGATGAAGATTTCGATGGTGAAGGTGGTCACGAACATGATGATGATGATGGAGATGCTGATAAGAACCCGAAGAAGAGGAGAAAGTATCACAGACACACTGCTGAACAAATAAGAGAAATGGAAGCGCTTTTCAAGGAATCACCGCATCCTGATGAAAAGCAGAGACAACAACTCAGCAAGCAACTTGGCCTTGCTCCAAGGCAAGTAAAGTTTTGGTTCCAAAATCGTAGAACCCAAATCAAGGCAATACAAGAGCGCCATGAAAATTCATTGTTGAAGACCGAATTAGAGAAATTACGCGAGGAAAATAAGGCCATGCGAGAGACCATAAACAAATCTTGTTGCCCCAATTGTGGTATGGGAACAGCTAGCCTAGATGGCTTCATGTCCTCCACTGAAGAGAAACAACTTCGTTTTGAAAATGCCAAACTCAAAGCTGAGGTAGAGAAGCTCCGAGCAGTTGTAGGAAAAAGTTCACCAGGGACAACGTCTCCTTCATGTTCTGCTGGCCATAATGAGGAAGAGAATAGAAACTCTTTGTGTTTTTACAAAGGAATTTTCGGGCTTGAGAAGTCAAGGATAATGGATATAGTGAACCAAGCAACGGAGGAGCTCGTAAAGATGGCAAATATGGGTGAACCATTATGGCTTCGTAGCGTTGAGACAGGTCGTGAAATACTTAACTATGATGAATATGTGAAGCAATTCGCAGTTGAAAATTCATGCAGTGAAAGGCCAAAGACATTCATCGAAGCTTCTAGAGAGGTGGGGGTTGTATTTGTGGATCTCTCACGGCTTGTCCAAAGTTTTCTAGACGTGAATCAATGGAAGGAAATGTTTCCGTGCTTAATATCAAAAGCAGCAACTGTTGATGTCATATGCAGGGGAGAAGGTTCTAACAGGAATGGTGCAGTGCAATTGATGTTTGCTGAGCTGCAAATGCTCACTCCAATGGTGCCCAGTAGAGAAGTGTATTTTGTGAGGTGCTGCAAACAGTTAAGTGCTGAACAGTGGGCAATTGTTGATGTATCCATAGACAAAGTAGAAGACAACATTGACGCATCCCTTGTCAAATGCAGAAAACGCCCATCTGGTTGTATTATTGAGGATAAGTCAAATGGCCATTGCAAGGTGATATGGGTGGAGCACTTGGAATGCCAGAAGATCACAGTTCATACAATGTATCGAGCCATTGTTAATAGTGGTCTAGCTTTTGGTGCAAGGCACTGGATTGCAACACTGCAACTCCAATGTGAACGTTTAGTTTTCTACATGGCCACAAATGTTCCCATGAAGGATTCAACTGGTGTTGCTACATTGGCTGGGAGGAAAAGCATTTTGAAGTTGGCACAGAGAATGGCATGCAGTTTCTGTCATGCAGTTGGTGCATCAAGCTTCCATACATGGACGAAGGTCACAAGTAAAACTGGAGAAGACATAAGGATTAGTTCTAGGAAGAACTTGAATGACCCTGGTGAACCTCTTGGGGTTATCTTGTCAGCAGTTTCTTCTATATGGCTTCCTGTCTCTCCTAATGTCCTGTTTGATTTCTTGAGAGATGAAGCTCGTAGAAGTGAGTGGGATATCATGGCCAGTGGTGCGTCAGTGCAGTCCATTGCAAATTTAGCTAAAGGAAAAGACCGAGGCAATTTTGTAAATATCCATAAAATACAATCAAAAGAAAACAGTACATGGATATTGCAAGATAGCTGCACAAGTGCTTATGAGTCAATGGTGGTGTATGCTCCTGTGGACTTAGCTGGTATTCAATCTGTACTAACAGGATGTGATTCAAGTAATCTTGCTGTGTTGCCCTCAGGATTCTCAATTCTTCCTGATGGACTAGGGGCAAGGCCATTTGTGATTACTTCAAGGCAAGAAGAAAAACACACAGAAGGAGGGTCTTTGTTTACAATGACATTCCAGATCCTTGCCAATGCTTCTCCAACGGCCAAGTTAACATTGGAGTCTGTGGAATCGGTTAATAATCTTGTGTCTTGTACATTAAGAAATATTAGAACAAGTTTGCAATGTGAAGATGGTTAG 2253 0.4363 MGVDMSNNKPPHTKDLFSSPALSLSLAGIFRHGAEAPETSSMEVVGDEVRREDTVEISSDNSGPVRSRSDEDFDGEGGHEHDDDDGDADKNPKKRRKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKTELEKLREENKAMRETINKSCCPNCGMGTASLDGFMSSTEEKQLRFENAKLKAEVEKLRAVVGKSSPGTTSPSCSAGHNEEENRNSLCFYKGIFGLEKSRIMDIVNQATEELVKMANMGEPLWLRSVETGREILNYDEYVKQFAVENSCSERPKTFIEASREVGVVFVDLSRLVQSFLDVNQWKEMFPCLISKAATVDVICRGEGSNRNGAVQLMFAELQMLTPMVPSREVYFVRCCKQLSAEQWAIVDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKITVHTMYRAIVNSGLAFGARHWIATLQLQCERLVFYMATNVPMKDSTGVATLAGRKSILKLAQRMACSFCHAVGASSFHTWTKVTSKTGEDIRISSRKNLNDPGEPLGVILSAVSSIWLPVSPNVLFDFLRDEARRSEWDIMASGASVQSIANLAKGKDRGNFVNIHKIQSKENSTWILQDSCTSAYESMVVYAPVDLAGIQSVLTGCDSSNLAVLPSGFSILPDGLGARPFVITSRQEEKHTEGGSLFTMTFQILANASPTAKLTLESVESVNNLVSCTLRNIRTSLQCEDG* 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr351g0028 750 ProSitePatterns 'Homeobox' domain signature. 127 150 IPR017970 GO:0000981|GO:0006355
Apr351g0028 750 Gene3D - 80 165 - -
Apr351g0028 750 CDD homeodomain 95 150 IPR001356 GO:0003677
Apr351g0028 750 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 15 747 - -
Apr351g0028 750 ProSiteProfiles START domain profile. 256 492 IPR002913 GO:0008289
Apr351g0028 750 ProSiteProfiles 'Homeobox' domain profile. 92 152 IPR001356 GO:0003677
Apr351g0028 750 Coils Coil 203 223 - -
Apr351g0028 750 SMART START_1 265 489 IPR002913 GO:0008289
Apr351g0028 750 SMART HOX_1 94 156 IPR001356 GO:0003677
Apr351g0028 750 MobiDBLite consensus disorder prediction 34 101 - -
Apr351g0028 750 SUPERFAMILY Bet v1-like 511 716 - -
Apr351g0028 750 Coils Coil 151 181 - -
Apr351g0028 750 Pfam Homeodomain 95 150 IPR001356 GO:0003677
Apr351g0028 750 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 15 747 IPR042160 -
Apr351g0028 750 Gene3D - 269 485 IPR023393 -
Apr351g0028 750 Pfam START domain 267 489 IPR002913 GO:0008289
Apr351g0028 750 SUPERFAMILY Homeodomain-like 80 153 IPR009057 -
Apr351g0028 750 CDD START_ArGLABRA2_like 260 488 - -
Apr351g0028 750 SUPERFAMILY Bet v1-like 258 489 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr351g0028 57 749 Homeobox Transcription Factor Family AT1G79840 64.296 0.0 915
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr351g0028 START 2.1e-54 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr351g0028 K09338 - gmx:100806193 1254.2