Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr351g0008 ATGACACAAACAACCTCTTCCTCCGAAACCACCGCCACGACCAGCACCAGTAGTAGCAACTCCTCCACTACTTCTTCACCCTCATCGTCACATTCTCCTCCAGAAAATGATACCCAAAGGCCCAAGCCCAAGCCCAAGAGACCCAGAGACTGCAGTAAGCACCCAGTGTACCACGGTGTACGAAAGCGCAACTGGGGCAAATGGGTCTCCGAAATTCGCGAGCCGCGCAAGAAATCGCGCATCTGGCTCGGCACCTTCGCAACACCCGAAATGGCGGCTCGAGCCCACGACGTGGCGGCTCTCAGCATCAAGGGCCAATCAGCAATTCTCAACTTTCCAGAAATTGCAGACTTGCTCCCCCGGCCCGTCACGTGTTCCCCACGTGACATCCAGGCCGCAGCTACGGCAGCCGCCGGTATGGTGAAATTCGACCCCGTAACAGAGTCCCCTGAGCCGTCGGAGCTGAGCGAGATAATTGAGCTGCCGAACATTGAAGACAGCTTGGACTCGGCTGAGTCGAGAGGCGAATTCATGTTACTCGACGCGGTGGATAGTTGGGTGTTTCCGGCAATGGGGTCAGAGGGAATCGAGTTTTGTGGCTCTTTTTCTGAGGAGTTATTGTTTTCTGAGATAGAGATACCAATTTGGAATTGA 654 0.5459 MTQTTSSSETTATTSTSSSNSSTTSSPSSSHSPPENDTQRPKPKPKRPRDCSKHPVYHGVRKRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALSIKGQSAILNFPEIADLLPRPVTCSPRDIQAAATAAAGMVKFDPVTESPEPSELSEIIELPNIEDSLDSAESRGEFMLLDAVDSWVFPAMGSEGIEFCGSFSEELLFSEIEIPIWN* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr351g0008 217 Pfam AP2 domain 55 105 IPR001471 GO:0003700|GO:0006355
Apr351g0008 217 MobiDBLite consensus disorder prediction 1 57 - -
Apr351g0008 217 Gene3D AP2/ERF domain 56 115 IPR036955 GO:0003700|GO:0006355
Apr351g0008 217 MobiDBLite consensus disorder prediction 1 36 - -
Apr351g0008 217 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 21 204 - -
Apr351g0008 217 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 21 204 - -
Apr351g0008 217 MobiDBLite consensus disorder prediction 37 57 - -
Apr351g0008 217 CDD AP2 57 114 IPR001471 GO:0003700|GO:0006355
Apr351g0008 217 SMART rav1_2 56 119 IPR001471 GO:0003700|GO:0006355
Apr351g0008 217 SUPERFAMILY DNA-binding domain 56 113 IPR016177 GO:0003677
Apr351g0008 217 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Apr351g0008 217 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
Apr351g0008 217 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr351g0008 44 189 AP2-EREBP Transcription Factor Family AT5G11590 56.571 1.08e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr351g0008 AP2 4.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr351g0008 K09286 - gmx:100804056 260.381