Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr351g0005 ATGGAAGCGCCGGAATACTTCGTCGGAGGCTATTTTGCCGCCGGAGGAGCTGACCAATTCTCGCCGACGGAGAAGCGCCACGCCGACCAGAAGTCCGGCGAGCCTTTCGTCATCGACGACCTACTCGATTTCTCCAATGCCGACGCCATTATGTCCGACGGTTTCTTCGACAATGTCGCCGGGAACTCCACCGACTCCTCCACCGTCACCGCCGTCGACAGCTGCAACTCCTCAATTTCCGGCAGCGACAACCGCTTCGCCGCCGCAATTGTCCCTCGTGGCTTCGCCAGCGATCACCAGTTCTCCGGAGAACTCTGTGTTCCGTACGATGACATGGCCGAACTGGAATGGCTCTCGAACTTAGTGGAAGATTCGTTTTCCGCCGAGGAGGAGCTGAAAACGCTGCAGCTTCTCTCCGGCGCCGCCGCATCCACTGCCATTGGCGCCAAACCGCAAACGCCAGAGTCGTCCTCTTCCACCGACACGCTCCCGCCGTTCGCTTCCGACGACACCGCTCGAAATGCACCGTTTCTCCACACGGAAACGCCGCTGCCAGGGAAGGCACGGAGCAAGCGCTCACGCGCCGCGCCGGGGGACTGGTCCACGCGCCTCCTGCACCTAGTTACTTCCGGCGAAGCGGCGGAGGAGCAGAAACCTCAGCAGGCGAAGGCGGCGCCGGCGAAGAGGAGGGAGGGATCGAATGCGGAGTGCTCAGGGCGGAAATGCCTGCACTGCGGCGCGGAGAAGACGCCGCAGTGGCGAACGGGACCAATGGGACCGAAGACGCTGTGCAACGCGTGCGGCGTGAGGTTCAAGTCTGGGAGGTTGGTGCCGGAGTACCGGCCGGCGGCGAGCCCAACGTTCGTGTCGACGAAGCATTCGAATTCGCATCGGAAGGTTTTGGAACTGAGGCGGCAGAAGGAACTGCAGCGACAGCAGCATCAGCAACTGTTGAGTCAGAGTTCAATTTTCGGCGTATCCAACGGTGGAGATGAGTTCTTGATCCACCATCATCACCATTGTGGGCATGATTTTAGGCACGTTATTTAG 1050 0.6057 MEAPEYFVGGYFAAGGADQFSPTEKRHADQKSGEPFVIDDLLDFSNADAIMSDGFFDNVAGNSTDSSTVTAVDSCNSSISGSDNRFAAAIVPRGFASDHQFSGELCVPYDDMAELEWLSNLVEDSFSAEEELKTLQLLSGAAASTAIGAKPQTPESSSSTDTLPPFASDDTARNAPFLHTETPLPGKARSKRSRAAPGDWSTRLLHLVTSGEAAEEQKPQQAKAAPAKRREGSNAECSGRKCLHCGAEKTPQWRTGPMGPKTLCNACGVRFKSGRLVPEYRPAASPTFVSTKHSNSHRKVLELRRQKELQRQQHQQLLSQSSIFGVSNGGDEFLIHHHHHCGHDFRHVI* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr351g0005 349 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 239 299 - -
Apr351g0005 349 PANTHER GATA TRANSCRIPTION FACTOR 1 349 - -
Apr351g0005 349 CDD ZnF_GATA 241 288 IPR000679 GO:0006355|GO:0043565
Apr351g0005 349 MobiDBLite consensus disorder prediction 146 238 - -
Apr351g0005 349 ProSitePatterns GATA-type zinc finger domain. 242 267 IPR000679 GO:0006355|GO:0043565
Apr351g0005 349 ProSiteProfiles GATA-type zinc finger domain profile. 236 272 IPR000679 GO:0006355|GO:0043565
Apr351g0005 349 PIRSF Txn_fac_GATA_plant 18 328 IPR016679 GO:0003677|GO:0005634|GO:0045893
Apr351g0005 349 Pfam GATA zinc finger 242 275 IPR000679 GO:0006355|GO:0043565
Apr351g0005 349 SMART GATA_3 236 286 IPR000679 GO:0006355|GO:0043565
Apr351g0005 349 PANTHER GATA TRANSCRIPTION FACTOR 9 1 349 - -
Apr351g0005 349 MobiDBLite consensus disorder prediction 149 167 - -
Apr351g0005 349 MobiDBLite consensus disorder prediction 222 237 - -
Apr351g0005 349 Gene3D - 237 318 IPR013088 GO:0006355|GO:0008270
Apr351g0005 349 Coils Coil 300 320 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr351g0005 32 349 C2C2-Gata Transcription Factor Family AT4G32890 46.061 7.73e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Apr351g0005 GATA 4.6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr351g0005 - - gmx:100776605 574.704