Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr349g0001 AAAGTAGTAGATCTTTTAGCCCCTTATCGCCGTGGAGGAAAAATAGGACTTTTCGGTGGAGCTGGTGTAGGTAAAACGGTACTCATTATGGAATTGATCAATAACATTGCCAAAGCTCATGGAGGTGTATCCGTATTTGGCGGAGTAGGTGAGCGTACTCGTGAGGGAAATGATCTTTACATGGAAATGAAAGAATCCGGAGTAATTAATGAACAAAATATTGCAGAATCAAAAGTAGCTCTAGTATACGGTCAAATGAACGAACCGCCCGGAGCTCGTATGAGAGTTGGTTTAACTGCCCTAACTATGGCGGAATATTTTCGAGATGTCAATGAGCAAGACGTACTTCTATTTATTGACAATATCTTCCGCTTCGTCCAAGCAGGATCTGAAGTATCTGCCTTATTGGGTCGAATGCCCTCTGCTGTGGGTTATCAACCCACCCTTAGTACTGAAATGGGTTCTTTACAAGAAAGAATTACTTCTACCAAAGAAGGGTCCATAACTTCTATTCAAGCAGTTTATGTACCTGCAGACGATTTGACCGATCCTGCTCCTGCCACGACATTTGCACATTTAGATGCTACTACTGTACTATCAAGAGGATTAGCGGCCAAAGGTATCTATCCAGCAGTGGATCCTTTAGATTCAACGTCAACTATGCTCCAACCTCGGATCGTTGGTGAAGAACATTATGAAACTGCACAAAGAGTTAAACAAACTTTACAACGTTACAAAGAACTTCAGGACATTATAGCTATCCTTGGGTTGGATGAATTATCCGAGGAGGATCGTTTAACCGTAGCAAGAGCACGAAAAATTGAACGTTTCTTATCACAGCCCTTTTTCGTAGCAGAAGTATTTACCGGTTCGCCGGGGAAATATGTTGGTCTAGCAGAAACAATTAGAGGGTTTAAATTGATTCTTTCTGGAGAATTAGATGGTCTTCCTGAACAAGCCTTTTATTTAGTGGGTAATATCGATGAAGCTACTGCGAAGGCTGTGAATTTAGAAATGGAGAAAGTGAAGGAAATCATTTTATCTACGAATAGCGGACAAATTGGAGTATTACCAAATCATGCGCCTATTGCCACAGCTGTAGATATAGGTATTTTGAGAATACGCCTTAACGACCAATGGTTAACGATGGCTCTCATGGGCGGTTTTGCTAGAATAGGCAATAATGAGATCACTGTCTTAGTAAATGATGCGGAGAAGGGTAGTGACATTGATCCACAAGAAGCACAGCAAACTCTTGAAATAGCAGAAGCTAATTTGAATAAGGCTGAAGGCAAGAGACAAACAATTGAGGCAAATCTAGCTCTCAGACGAGCTAGAACACGAGTAGAGGCTATCAATATGATTTCGTAA 1371 0.4114 KVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITSTKEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYETAQRVKQTLQRYKELQDIIAILGLDELSEEDRLTVARARKIERFLSQPFFVAEVFTGSPGKYVGLAETIRGFKLILSGELDGLPEQAFYLVGNIDEATAKAVNLEMEKVKEIILSTNSGQIGVLPNHAPIATAVDIGILRIRLNDQWLTMALMGGFARIGNNEITVLVNDAEKGSDIDPQEAQQTLEIAEANLNKAEGKRQTIEANLALRRARTRVEAINMIS* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr349g0001 456 Coils Coil 419 439 - -
Apr349g0001 456 TIGRFAM ATP_synt_epsi: ATP synthase F1, epsilon subunit 340 453 IPR001469 GO:0015986|GO:0045261|GO:0046933
Apr349g0001 456 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 224 IPR027417 -
Apr349g0001 456 SMART AAA_5 11 203 IPR003593 -
Apr349g0001 456 ProSitePatterns ATP synthase alpha and beta subunits signature. 210 219 IPR020003 GO:0005524
Apr349g0001 456 Gene3D - 334 410 IPR036771 -
Apr349g0001 456 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 222 336 - -
Apr349g0001 456 Hamap ATP synthase epsilon chain [atpC]. 323 451 IPR001469 GO:0015986|GO:0045261|GO:0046933
Apr349g0001 456 CDD F1-ATPase_beta 1 224 - -
Apr349g0001 456 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 340 404 IPR020546 GO:0015986
Apr349g0001 456 Gene3D - 1 221 IPR027417 -
Apr349g0001 456 CDD ATP-synt_F1_beta_C 226 333 - -
Apr349g0001 456 PANTHER ATP SYNTHASE 1 341 - -
Apr349g0001 456 TIGRFAM atpD: ATP synthase F1, beta subunit 1 337 IPR005722 GO:0015986|GO:0045261|GO:0046933
Apr349g0001 456 PANTHER F0F1-TYPE ATP SYNTHASE, BETA SUBUNIT 1 341 - -
Apr349g0001 456 Pfam ATP synthase, Delta/Epsilon chain, long alpha-helix domain 409 452 IPR020547 -
Apr349g0001 456 CDD F1-ATPase_delta 340 446 IPR001469 GO:0015986|GO:0045261|GO:0046933
Apr349g0001 456 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 1 219 IPR000194 GO:0005524
Apr349g0001 456 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 340 405 IPR036771 -
Apr349g0001 456 Gene3D - 222 333 IPR024034 -
Apr349g0001 456 Gene3D - 412 456 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr349g0001 1 283 Primary Pumps ATPases(2) AT1G78900 29.470 5.65e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr349g0001 K02112 - csin:114305725 866.3