Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2670 ATGCAATTAGCGTCAAATGGTGACAAGGAAGAATGTTCAGAAAGCGAACCCATCTTGAACCAGCATCTTAATTTGCCACCCTCTGCCGAATCCTCCTTTTCCTGCGAAATTATTCCTGCCACTCCCAATGACGATGATTTACAGAATGTTCATGTTGATGAGACTTGTCATCTCGTAAATGCCGATCAGTCACAATGCAGGATATGCCTTGATATTGGAGGAGAAGATTTAATTGCCCCTTGCCATTGCAAAGGTACGCAAAAGTATGTCCACAGATCATGCCTCGATAATTGGAGATCCACCAAGGAGGGCTTTGCTTTTTCTCACTGTACAGAGTGCAGAGCTGTCTTCATATTGCGTGCAAATGTCCCACCAGATCGGTGGTGGTTGAGATTAAAATTTCAGTTCCTTGTTGCTAGGGATCATGCTTTCATTTTCATAATTGTTCAACTGGTTGTTGCTTTCTTGGGAGTGCTTGTGTACAGATTTTATGGCGATGAACTGAGAGAAATGTTTGGTTATGAAGAACATCCATATGGATTTTATACAATGGCTGTCCTAGCCATTGTTTTGGTGGGTTTGCTCTATGGCTTCTTCATAGCAATAATATGTGGCCAAAGAATTAATGAACGCCACTACCATGTTCTTGCCAAACAAGAATTGACTAAGGAATATGTGGTAGAAGATCGAGAACATGTAAAGAATGTCCCTGAACTTGATCCCAGCCATGTGACAGAACTGAGGATGTTGGGCCTGTACTAG 762 0.4213 MQLASNGDKEECSESEPILNQHLNLPPSAESSFSCEIIPATPNDDDLQNVHVDETCHLVNADQSQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILRANVPPDRWWLRLKFQFLVARDHAFIFIIVQLVVAFLGVLVYRFYGDELREMFGYEEHPYGFYTMAVLAIVLVGLLYGFFIAIICGQRINERHYHVLAKQELTKEYVVEDREHVKNVPELDPSHVTELRMLGLY* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2670 253 PANTHER OS02G0132300 PROTEIN 2 252 - -
Apr2g2670 253 ProSiteProfiles Zinc finger RING-CH-type profile. 58 120 IPR011016 GO:0008270
Apr2g2670 253 SMART ringv_2 65 114 IPR011016 GO:0008270
Apr2g2670 253 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 252 - -
Apr2g2670 253 Pfam RING-variant domain 66 113 IPR011016 GO:0008270
Apr2g2670 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 118 IPR013083 -
Apr2g2670 253 CDD RING_CH-C4HC3_MARCH 66 114 - -
Apr2g2670 253 SUPERFAMILY RING/U-box 61 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2670 Apr-Chr2 30393994 30398169 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2670 30 212 C3H Transcription Factor Family AT1G50440 66.492 5.97e-88 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2670 - - gmx:100789593 499.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2670 2 30393994 30398169 Apr2g2670 2 30393994 30398169 ECH