Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2668 ATGGGTCGTGGAAGAATTTCTATGGAACTGATTCAGAAGGAAAAGGCTCGCAAGACAACATTTCAAAAGAGAAAGAGCGGATTAATGAAGAAAGTTTATGAGTTTTCCACTCTTTGCGGGGTTGATGTTTGCGTAATTATCTATGCTCCTATGTTTGATGGTCAAGGACTAGCTGAACCTGAAACATGGCCCCAAGACACCAAAGAAGTACATCGCATCATTCAAAAATATCATAACACGACTAGTGATAGACGTCCTAAGATGTATGATGTGCAAGAGTATTACAAGGATAGGATGAAAAAGGTTGAATCTGAGATTTCCAAAGTGTGCAAAGAGAAGCTCAAGATCATGTACCCAACCTGGGATGAATCTTTCAATGCTCTTGGCGAGGAACAGCTGAGGATGTTTGTTAGTATGCTGGATGTTAAGCTTGATGCTTGTAATCAAAGGATGAATATGCTAGAAGGAGATCTAAAGGGAAAAGCAATAGCAGAATCAGACAAGGTTGAGACACTTGTTCCCTACTTGGCCTCAAGTCCAAGTAGCCATCTCAATCTCATGCAGAACACGTCTCAAGCGCAAAATTTCCCTCTCCCTGTGAAATCAATTAGCGACAACAATCACCTAGCATTATACCCATTTCAGCTTAGCCAAAGTTCTCAATCTTCCATGCTTCATTTTGGACAAAATTGTATGCAATTAATGGGAAAAAATGAAATGGTGGATTGGGCTGATCAAGTTGGTGCTGTTACTTATGATCCCAAAACCGGTATGCTAAAGGAGAATGGAGCTGCAAACAATCAAAACTCCTTACCATGCTATTACAATGGAAATGTACAAACAATGCAGCCATATACTATTGCTTTGCAGACTCTTCCTTCTCACTCGCAGTATGAAGCACCTTTCCAAATCCCATCAGATCCACCACCAGGGTTTCAACTTAATGGACTTTACGATTCAAATATGCTTCAAGCTCAAATGTTCACCTACATGCATGGAGGGAAGTAA 1008 0.4048 MGRGRISMELIQKEKARKTTFQKRKSGLMKKVYEFSTLCGVDVCVIIYAPMFDGQGLAEPETWPQDTKEVHRIIQKYHNTTSDRRPKMYDVQEYYKDRMKKVESEISKVCKEKLKIMYPTWDESFNALGEEQLRMFVSMLDVKLDACNQRMNMLEGDLKGKAIAESDKVETLVPYLASSPSSHLNLMQNTSQAQNFPLPVKSISDNNHLALYPFQLSQSSQSSMLHFGQNCMQLMGKNEMVDWADQVGAVTYDPKTGMLKENGAANNQNSLPCYYNGNVQTMQPYTIALQTLPSHSQYEAPFQIPSDPPPGFQLNGLYDSNMLQAQMFTYMHGGK* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2668 335 PANTHER PROTEIN, PUTATIVE-RELATED 3 261 - -
Apr2g2668 335 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Apr2g2668 335 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Apr2g2668 335 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Apr2g2668 335 Gene3D - 13 111 IPR036879 GO:0003677|GO:0046983
Apr2g2668 335 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Apr2g2668 335 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Apr2g2668 335 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Apr2g2668 335 SUPERFAMILY SRF-like 2 100 IPR036879 GO:0003677|GO:0046983
Apr2g2668 335 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Apr2g2668 335 PANTHER MADS BOX PROTEIN 3 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2668 Apr-Chr2 30378855 30380239 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2668 1 238 Type I MADS-box Gene Family AT5G55690 34.286 6.25e-30 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Apr2g2668 SRF-TF 6.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2668 - - lang:109350953 441.81