Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2656 ATGTCAAGTGTTGCTCAAAATCAAAACAACCAACGACCAGCTTCAATGAAGAAGGTGAAACAGGGTTATAGTTCTCTGTATTTCAATCCTTTAAACGACATCACTCACTACCGTAGCTTCAGCTGCGACTCTGGCCGCTTACCCTCCAAAGGTAACAGTAACACCTTTCACTGTCAAGATCAAGTCCATGACAACAAGGAAAACGCCAACGCCAACGCCAACGCCAACGCCAATGGGTCATCTTCTCTGCCAAAGCCCTTCTCAAAGTCCAAGTCTTTGTCCACTGACAGCATTTTGAAGCCTTCCTCGCTTCAGTTCTGCATGCAAATGAACGACCTTGAATCGCATAATTCCACCTCTTTGAACATTTGGGACTACTCTGACTCAGAGGCAGCTCCTGCTTCTTCCTGGTCCACTTTGCCCAACAAGTCCTTGATTTGTAGACCCTTGCCGATAGATATTGGAGGGTGCACGTGTTTTATTGTGAAGGAAGCAACCCCGCAGGAACTATCAGGGGGCACTTTCTTCTCTCTTTATACCAATGAAGGTCAGGGACGGCAGAATAGGAAACTAGCCGTGGCCCACCACAGGCGGCGGAATGGGCGGTCTCAGTTCATTGTAGCTCAGAATGTAAAAGGAATAGTGTCCAACTCAGATGATAGTTTTCTTGGGACAGTAACAGCTAACCTCATGGGCTCAAAATACCACATTTGGGATCAGGGATATCGTCATAATTCACTAAGTAAACAACCAAAGCCACCGCTTGCTGTTGTGACCTATATACCTACAGTAACAACGTGCACAGGAAGTCACAGAAGCATGAGGGCATATATACCCAAGCATCAATCCATGTCACTGAAGAACACAACCCAGGTGCAACATATCAAAGGATTACCAATGAATTGGGAGGGAAAATTGGACAAAGTCCATCAACTGTTCTCAAGGGTTCCACTTTACAACAGGATTTCCAAGCAATACGAACTTAACTTTAGAGATAAAGGAAAGGCAGGACTAAAAATTCAAAGATCAGTTAAAAATTTCCAGCTGACTTTAGAGGAGAATGGGAGGCAAACCATCCTGCAGCTAGGGAGGGTGGCAAAATCAAAATTCATCATGGACTTCAGATATCCCTTGACAGGTTACCAGGCGTTTTGCATATGTTTGGCTTCCATTGATGCAAAGCTTTGTTACACAGTGTAG 1200 0.4483 MSSVAQNQNNQRPASMKKVKQGYSSLYFNPLNDITHYRSFSCDSGRLPSKGNSNTFHCQDQVHDNKENANANANANANGSSSLPKPFSKSKSLSTDSILKPSSLQFCMQMNDLESHNSTSLNIWDYSDSEAAPASSWSTLPNKSLICRPLPIDIGGCTCFIVKEATPQELSGGTFFSLYTNEGQGRQNRKLAVAHHRRRNGRSQFIVAQNVKGIVSNSDDSFLGTVTANLMGSKYHIWDQGYRHNSLSKQPKPPLAVVTYIPTVTTCTGSHRSMRAYIPKHQSMSLKNTTQVQHIKGLPMNWEGKLDKVHQLFSRVPLYNRISKQYELNFRDKGKAGLKIQRSVKNFQLTLEENGRQTILQLGRVAKSKFIMDFRYPLTGYQAFCICLASIDAKLCYTV* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2656 399 Pfam Tub family 148 392 IPR000007 -
Apr2g2656 399 MobiDBLite consensus disorder prediction 70 94 - -
Apr2g2656 399 SUPERFAMILY Tubby C-terminal domain-like 134 396 IPR025659 -
Apr2g2656 399 Gene3D Tubby Protein; Chain A 142 392 IPR025659 -
Apr2g2656 399 PANTHER TUBBY-LIKE PROTEIN 8 17 397 - -
Apr2g2656 399 PRINTS Tubby superfamily signature 222 246 IPR000007 -
Apr2g2656 399 PRINTS Tubby superfamily signature 335 351 IPR000007 -
Apr2g2656 399 PRINTS Tubby superfamily signature 355 374 IPR000007 -
Apr2g2656 399 PRINTS Tubby superfamily signature 376 398 IPR000007 -
Apr2g2656 399 PANTHER TUBBY-RELATED 17 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2656 Apr-Chr2 30292409 30294901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2656 79 292 TUB Transcription Factor Family AT1G16070 53.913 5.99e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Apr2g2656 Tub 3.9e-43 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2656 K19600 - gmx:100803500 525.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2656 2 30292409 30294901 Apr2g2656 2 30292409 30294901 ECH