Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2654 ATGGATCAAGTTTCTCTGAACAGCGAGCCCGTAGCAGATGAGGAAGGCGATGGTGACGGATTTGAGTGGCAAAGTGAAATTGTGAATCAAAATGGGACCATTCAACCACACAACCCTCTTCCTCCTGCTGTTGGAATGGAATTCGAGACTTACGAGGATGTTTATTACTTCTATAATTGCTATGCCAAGGAACATGGTTTTGGGGTTAGGGTAACAAACACTTGGTATCGTAAGAGTAAGGAACGTTACAGAGCAAAACTTAGCTGCAGTAGTGCAGGCTTCAAGAAAAGAAGTGAGGCTAATCGTCCCAGACCCGAAACTAGAACTGGTTGTCCTGCTATGATCAAGTTTAGGTTGATGGATTCCAAAAGGTGGAGAATTATAGAAGTTGAGCTTGACCACAACCACCTGATTAACCCAACCACTGCAAAGTTTTATAAGTCCCATAAGCACGTTGCCCTTGGGACCAAAAGAACCTTGCAGTTAGATGCTGCTCAACAGGTTCACAAAATTAGGATGTTTCGAACCGTCATAGTTGATGCTGAGGATACTGCAAGTCTAGATGTTGATCAGGGGAAGTCCCATGACAGCATCTACTCCAATCAGTTGAGGCTAAAGCACGGTGATGCCGAAGCGATTCTGAATTTTTTTAGTGACCTGCAATTGGCAGATCCAGACTTCTTCTATGTGGTGGATATCAATGAGAGGGGATGTTTGAGGAATTTGTTCTGGGTTGATGCCAAGTCCAGAGTGGCATACAGTTATTTTAGTGATGTTCTTGCAATTGATACCACGTGTTTGACAGGCAAATATCAAGTTCCTCTGGTTATGTTCCTTGGGTTAAACCACCATAAACAATCCATTTTGTTTGGTTGTGGATTGCTTGCTGGTGTTACCATTGAATCGTATACGTGGCTGTTCAGGGCTTGGCTTACTAGTATCTTAGGACGCCCCCCTCAAGTTATAATTACTGACCAATGTGGAATCTTGCAAACTGCAGTTGTTGATGTCTTTCCAAGAGCTACACACTGCCTTTGCTTATTTAATATTATGCAAAAAATCCCCGAAAAACTGGGAGCATTGACGGAATATGAAGCAATCAATGCAGCTTTGAACAGAGCAGTTTATTTCTCACTGAGGGCTGAGGAATTTGAAGCAACTTGGGAGGACATGATGAAAAGCTATGAAATGAGAGGCCATAAATGGCTCCAATCATTACACGAGGACCGGAAACGGTGGGTTCCAGTTTATCTGAAGGAAATTTTCTTGGCAGGAATGTTTCCAATTCAACCAACTGACGTTGTGTCATTTTTCTTTGATGGGTACCTCGATGAAAAAACATCTCTACAAGATTTTCTTGAAAAATATGACCAGGCTTTACGGACAAAACGACAACTTGAGGCTTTGGCAGATTTGGACTCAAAATCTTCTAGCTTTATGCCAAAATCAAGGTCTTACTTTGAGTTGCATATTTCAAAGTTATACACCAATGAAATATTAAGAATATTTGAAAGGGAAGTGGAAGGGATGTATTCTTGCTTTAGCTCCAGACAGATAAATGTTGATGGGCCAGTCATCACATATGTTGTCCAGGAGCAAGTTCGAGTTGAGGGAAGTCAGAGAGATGCAAGAGATTATGAAGTGTACTATAATGAAGCTGAAATGGATGTCCTTTGCATTTGTGGTTTGTTCAATTTCAAAGGTTACCTGTGTAGGCATGCTTTATTTATCTTAAGCCAAAATGGGATAAAAGAGATCCCACATCAGTACATTCTGTCAAGATGGAGAAAAGATATAAAGCGTAGCAATGTTTATGATCACAATTGTAGTGGCGTTGATATTAGTAACCCAGTTCATAGGTATGACCATTTATATAGACAGATTGTTAAGGTTGTAGAGGAAGGTAAGAAATCACATGATCATTACAGGACTGCAGTACAAGCATTGGAGAATGTATTGAACAAGCTTCATCTTGTAAACGTAGAGGATCCCAATATAGTGTACAAGAATTGA 2013 0.4069 MDQVSLNSEPVADEEGDGDGFEWQSEIVNQNGTIQPHNPLPPAVGMEFETYEDVYYFYNCYAKEHGFGVRVTNTWYRKSKERYRAKLSCSSAGFKKRSEANRPRPETRTGCPAMIKFRLMDSKRWRIIEVELDHNHLINPTTAKFYKSHKHVALGTKRTLQLDAAQQVHKIRMFRTVIVDAEDTASLDVDQGKSHDSIYSNQLRLKHGDAEAILNFFSDLQLADPDFFYVVDINERGCLRNLFWVDAKSRVAYSYFSDVLAIDTTCLTGKYQVPLVMFLGLNHHKQSILFGCGLLAGVTIESYTWLFRAWLTSILGRPPQVIITDQCGILQTAVVDVFPRATHCLCLFNIMQKIPEKLGALTEYEAINAALNRAVYFSLRAEEFEATWEDMMKSYEMRGHKWLQSLHEDRKRWVPVYLKEIFLAGMFPIQPTDVVSFFFDGYLDEKTSLQDFLEKYDQALRTKRQLEALADLDSKSSSFMPKSRSYFELHISKLYTNEILRIFEREVEGMYSCFSSRQINVDGPVITYVVQEQVRVEGSQRDARDYEVYYNEAEMDVLCICGLFNFKGYLCRHALFILSQNGIKEIPHQYILSRWRKDIKRSNVYDHNCSGVDISNPVHRYDHLYRQIVKVVEEGKKSHDHYRTAVQALENVLNKLHLVNVEDPNIVYKN* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2654 670 Coils Coil 449 469 - -
Apr2g2654 670 MobiDBLite consensus disorder prediction 1 20 - -
Apr2g2654 670 Pfam MULE transposase domain 259 353 IPR018289 -
Apr2g2654 670 Pfam FAR1 DNA-binding domain 57 139 IPR004330 -
Apr2g2654 670 PANTHER PROTEIN FAR1-RELATED SEQUENCE 8 28 660 - -
Apr2g2654 670 SMART 26again6 557 584 IPR006564 GO:0008270
Apr2g2654 670 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 28 660 IPR031052 GO:0006355
Apr2g2654 670 Pfam SWIM zinc finger 548 579 IPR007527 GO:0008270
Apr2g2654 670 ProSiteProfiles Zinc finger SWIM-type profile. 546 582 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2654 Apr-Chr2 30279446 30298281 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Apr2g2654 MULE 1.8e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2654 - K17604 pvu:PHAVU_005G183900g 1093.95