Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2628 ATGGACCTTCTTTGGTCAGAGGCCCAGCCTCGTCCATCTGAAAAGTTGATCGTCGCATTTTCAGAGACTCCACCGTGCTCAAAGCGAGAAAAGGAAGATGAAAAACACCCACATGAGTCTGCTCCACGCCTTCTACTGGATCTAAGTCTCCCTAGTGAAGATTCAGGTGATGACTCAAAGCCAGAACTCAATCTCATCAACTGTTTCGACACAAATGTGTCCATGAATTCCTCGGAATCTAGTAATCATGGTAATGAAGTGGAGCCAAAAATTTTCTCGTGCAACTACTGCCAGAGAAAGTTTTATAGTTCGCAGGCTCTTGGGGGACACCAAAATGCACATAAGCGTGAAAGAACATTGGCAAAAAGAGGACATAAAGTTGGTGGTGCAGTTTCAATAGATTTTGGACAAAGGTACTCTAGTATGGCTTCTCTTCCTTTGCATGGCTCATATAACAGGTCACTTGGAATTCAGGTGCATTCTATGATCAACAAACCCTCTTATCAAACACCCATTTTCGGTTTGTCCCATTCCCATGCCCAAAAAGGGTGGCAGAGGCATCCTATGTACTCAAAAGCGGCAATTGAGAGTCTTGCATCTGAGAATTTTCATGTGGAGACAGAAACCGAATCATCCTTGGCTGGTGGCATCCAACGATTAGGGAAGCCTTCTCCCAGGTTAGTGCCAGAAGGATTTGGAGGTTACTTGTTGGGTAGTATTTCCCATTTGAAGACTAAACAAGAGGAGTTGCAGAAGCTTGACTTGTCCCTCAAACTCTAA 780 0.4436 MDLLWSEAQPRPSEKLIVAFSETPPCSKREKEDEKHPHESAPRLLLDLSLPSEDSGDDSKPELNLINCFDTNVSMNSSESSNHGNEVEPKIFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGHKVGGAVSIDFGQRYSSMASLPLHGSYNRSLGIQVHSMINKPSYQTPIFGLSHSHAQKGWQRHPMYSKAAIESLASENFHVETETESSLAGGIQRLGKPSPRLVPEGFGGYLLGSISHLKTKQEELQKLDLSLKL* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2628 259 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 28 259 IPR044246 GO:0009788
Apr2g2628 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 119 IPR013087 -
Apr2g2628 259 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 28 259 - -
Apr2g2628 259 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Apr2g2628 259 SUPERFAMILY beta-beta-alpha zinc fingers 89 119 IPR036236 -
Apr2g2628 259 MobiDBLite consensus disorder prediction 16 61 - -
Apr2g2628 259 Gene3D Classic Zinc Finger 70 133 - -
Apr2g2628 259 MobiDBLite consensus disorder prediction 25 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2628 Apr-Chr2 30126766 30127737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2628 30 259 C2H2 Transcription Factor Family AT5G10970 42.739 1.70e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr2g2628 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2628 - - gmx:100812573 336.65