Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2627 ATGGCTAGACCCCAACAACGCTATCGAGGTGTCCGCCAGAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGCCACCCTCTTTTGAAGACTAGAATATGGCTAGGAACGTTTGAAACAGCAGAAGATGCAGCAAGAGCGTACGATGAAGCAGCAAGGCTCATGTGTGGTCCAAAAGCACGCACCAATTTCCCATACAATCCCAATGAGCCACAATCATCTTCATCCAAACTCCTCTCAGCAGCTCTCACCGCTAAGCTACACAAGTGTCACATGGCTTCCCTTTCCCTTCAAATGACAAAGCAGAAAGCATCACAGAAAGAGCCTGAGGAAGCACAAGGTTCATCCAACCCTTATGCCTCAGGCAGTGCCATTGTGGGAACAAGCTCAGACACTAGCTTTAGATGGCCAGAGAATAGACAGTGGCTAGAAGGGAACTGGGTTGGCGATGAAGGCCAAGTTGACGTGGCAGATCAGCAACAACAATTTCAGCCAGTTCTTGAAGATGCTCACATAGAACAGATGATACAAGAGTTGCTTGATTATGGGTCAATTGAACTTAGTTCAGTAGACTCAGCTTAA 579 0.4767 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNEPQSSSSKLLSAALTAKLHKCHMASLSLQMTKQKASQKEPEEAQGSSNPYASGSAIVGTSSDTSFRWPENRQWLEGNWVGDEGQVDVADQQQQFQPVLEDAHIEQMIQELLDYGSIELSSVDSA* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2627 192 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Apr2g2627 192 PANTHER ETHYLENE RESPONSE FACTOR 1 188 - -
Apr2g2627 192 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Apr2g2627 192 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Apr2g2627 192 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Apr2g2627 192 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 188 - -
Apr2g2627 192 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Apr2g2627 192 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Apr2g2627 192 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Apr2g2627 192 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Apr2g2627 192 MobiDBLite consensus disorder prediction 97 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2627 Apr-Chr2 30116400 30117198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2627 1 189 AP2-EREBP Transcription Factor Family AT5G25190 63.021 2.00e-74 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr2g2627 AP2 8.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2627 - - gmx:100777851 287.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr9g2818 9 35160045 35161181 Apr2g2627 2 30116400 30117198 ECH
Apr2g2627 2 30116400 30117198 Apr2g2627 2 30116400 30117198 ECH