Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2623 ATGAATCTTCTTCTTCTTCTGTTCCTGCCTATTTGGCTGCTCAGCATTTCTCTTTCCTCACCAATTCTTCATGCTGCTTCATCCCCCATTTCTGTTTCTCAATCTTCTGCAAATGCACAAGCTGAATCTCCAGGAATTCAGGAGGTTAGAGTAGTGCGCCATCAGAATTTGAATAAGAGAATTCTAATAGCACTAATTGCTTGTTCTGCTCTTCTTGGAGGAGTTTTCCTATCCTTATCATATGTCTGGTTCCGTCGACATAGAAACTTAAGATGCTCAAGTAGAAAAGGGCAAGAAAGGATCGAGACTGCAAAAGGTGAAACCTTAAGCTCAGTTAATGCTAAACTTAGCTACTCAAGGATGGCAGATAAAAAGAGTTCGGTTGCTATTTTTGACTTTCAGCTGTTAGTGGCTGCCACAAACAGCTTTGCCACAAGTAATATTATGGGAGAGAGTGGTTCTAGAACTGTTTACAGAGCTCGTTTTGATGAACATTTTCAGGCAGCTGTGAAGAAAGCAGATAGTGATGCTGATAGAGAATTTGAGAATGAAGTGAGTTGGTTGAGCAAGATGCGGCATCAGAATATCATAAAACTTCTGGGTTACTGTATTCATGGTGAATCAAGGTTTCTTGTTTATGAATTGATGGAAAATGGATCTTTGGAAACTCAATTGCATGGGCCTAATCGGGGATCATCTTTAACTTGGCATCTCAGATTAAGAATTGCAATCGATGTTGCCAGAGCATTAGAATATCTCCACGAGCATTCCAATCCTCCTGTGGTTCATAGAGACCTAAAGTCTTCTAATGTTCTTCTAGATTCAGACTTTAATGCCAAGTTATCAGATTTTGGACTTGCCATGGTTTCTGGAGTGCAACACAAGAACTTGAAGATGTCAGGAACTTTGGGATATGTGGCACCTGAGTACATATCACATGGTAAACTAACGGATAAGAGCGATGTTTATGCTTTTGGGGTTGTCCTTCTAGAACTTCTAACCGGAAGAAAACCCATGGAGAACATGTCCTCACACCAATATCAATCCCTGGTATCATGGGCCATGCCTCAGCTAACTGATAGATCCAAGCTTCCAAGTATTCTGGATCCTGTTATCCGAGACACAATGGATTTGAAACATTTATATCAGGTTGCTGCTGTGGCTGTACTCTGCGTGCAAGCAGAACCAAGTTATAGGCCACTAATAACAGATGTGTTACACTCTCTCATCCCTTTGGTACCCGTTGAGCTTGGAGGGTCACTCAGAGTTACAGAACCAATTCGCTCAGAGAACTCTCAATGA 1302 0.414 MNLLLLLFLPIWLLSISLSSPILHAASSPISVSQSSANAQAESPGIQEVRVVRHQNLNKRILIALIACSALLGGVFLSLSYVWFRRHRNLRCSSRKGQERIETAKGETLSSVNAKLSYSRMADKKSSVAIFDFQLLVAATNSFATSNIMGESGSRTVYRARFDEHFQAAVKKADSDADREFENEVSWLSKMRHQNIIKLLGYCIHGESRFLVYELMENGSLETQLHGPNRGSSLTWHLRLRIAIDVARALEYLHEHSNPPVVHRDLKSSNVLLDSDFNAKLSDFGLAMVSGVQHKNLKMSGTLGYVAPEYISHGKLTDKSDVYAFGVVLLELLTGRKPMENMSSHQYQSLVSWAMPQLTDRSKLPSILDPVIRDTMDLKHLYQVAAVAVLCVQAEPSYRPLITDVLHSLIPLVPVELGGSLRVTEPIRSENSQ* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2623 433 ProSiteProfiles Protein kinase domain profile. 143 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g2623 433 Gene3D Phosphorylase Kinase; domain 1 104 215 - -
Apr2g2623 433 CDD STKc_IRAK 149 412 - -
Apr2g2623 433 SUPERFAMILY Protein kinase-like (PK-like) 121 409 IPR011009 -
Apr2g2623 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 261 273 IPR008271 GO:0004672|GO:0006468
Apr2g2623 433 Pfam Protein tyrosine and serine/threonine kinase 156 367 IPR001245 GO:0004672|GO:0006468
Apr2g2623 433 Gene3D Transferase(Phosphotransferase) domain 1 216 414 - -
Apr2g2623 433 PANTHER RECEPTOR-LIKE KINASE 19 424 - -
Apr2g2623 433 SMART serkin_6 143 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g2623 433 PANTHER OS01G0253100 PROTEIN 19 424 IPR045271 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2623 Apr-Chr2 30100074 30103422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2623 4 355 Receptor kinase-like Gene Family AT1G80640 47.283 1.00e-108 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Apr2g2623 PK_Tyr_Ser-Thr 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2623 - - gmx:100811188 706.442