Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2620 ATGGCTATAACTCCTTTTTCAATAAATGCCAAACAAATAGTTTTGTTAACAGTGAAGAGGGTCGTAGGGATCGAGCAACAAGCCTTGTATTCACAAACTCACGACTCTATGAATTCTTCTTCTTCGTTGGGGAACATAAACTTTGAACTCACGACAACCCAAGGAACGAAGAGGGTCAGAACCTCCTCGGAAACACAGGATCACATAATGTCGGAGAGAAGAAGGAGACAGCAAATGGCAGAGAGATTCATAGCACTTTCAGCAATTATTCCTGGCTTGAAGAAGGAATTAGACGATGAGAAGGATCCATTAGAGTTGGAGGAGTGCCACACTGAGGACGAGGAGTTTCTGAGAGATATCTTGCAGCAGCCAGCGGTGTCTTCTGAAAGTGAAAGTCAACCTTTTGTGCAGTTGACCGCTGCCGCAGTTACAGACGGTGGTAGCAGTTTATCTTCAGATGAGATGGTTGGGTCGGAAAGGCCTGGGAAAAGGACTCGTCTATCTTCGTCTCCTCAACCAAGGGCGTACATTTTATCTTTCGATAACTCTACCATAATACCAGCTACCCCTCAACCTCAACCTCAACCTCATGCTCGCTCTTCTAAATCTAATGCCCCTTCCTCCAAAAAACGGGCCCTCCAAAATCTCACCTTTCAATCAAAGCCCAAGCCCAAGCCCACCCATGGACCAAAGAAGAATAGAACCGATTCCCAGACTCTCGATCACATTATGGCCGAGAGAAAACGGAGACAGGAACTCACTGAGAGATTCATCGCCCTTTCCGCCACTATTCCCGCCTTGAAGAAGACGGACAAGAGTTCCATACTTCGCGAAGCAATTAATTACGTAAAACAACTTCAAGAACGGGTGACGGAGCTAGAACAGCAAAACAAGAGAGGCAAAGACTCCATAATAATCCTCAAGAGGACTGATTTGTATGCAAATAATGAAGATAACACTTCAAGTGAAACAAATTCTGAGGATTGTTGTAGAACCAGCGAAATGCTCCCTGATATTGAAGCAAGAATGATGGAGAATGAGGTACTCATTGAAATCCATTGTGAGAAGGAAGATGGGGTAGAGCTCAAAATACTGGAACAGCTTGAAAATCTTCATCTTAGTGTCACTGGCAGCAGTGTATTACCCTTTGGGAATTCAACTCTTGGCATTACTATTATCGCTCAGATGGGTGACGCCTACAGAACGACGGTGAATGATCTGGTGAAAAATCTAAGGCACGTGCTGTCGAATCACATGACTATGAATCCTGATCCGTACTAG 1281 0.4457 MAITPFSINAKQIVLLTVKRVVGIEQQALYSQTHDSMNSSSSLGNINFELTTTQGTKRVRTSSETQDHIMSERRRRQQMAERFIALSAIIPGLKKELDDEKDPLELEECHTEDEEFLRDILQQPAVSSESESQPFVQLTAAAVTDGGSSLSSDEMVGSERPGKRTRLSSSPQPRAYILSFDNSTIIPATPQPQPQPHARSSKSNAPSSKKRALQNLTFQSKPKPKPTHGPKKNRTDSQTLDHIMAERKRRQELTERFIALSATIPALKKTDKSSILREAINYVKQLQERVTELEQQNKRGKDSIIILKRTDLYANNEDNTSSETNSEDCCRTSEMLPDIEARMMENEVLIEIHCEKEDGVELKILEQLENLHLSVTGSSVLPFGNSTLGITIIAQMGDAYRTTVNDLVKNLRHVLSNHMTMNPDPY* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2620 426 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 237 303 IPR036638 GO:0046983
Apr2g2620 426 MobiDBLite consensus disorder prediction 163 188 - -
Apr2g2620 426 MobiDBLite consensus disorder prediction 195 222 - -
Apr2g2620 426 MobiDBLite consensus disorder prediction 145 241 - -
Apr2g2620 426 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 117 IPR011598 GO:0046983
Apr2g2620 426 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 237 286 IPR011598 GO:0046983
Apr2g2620 426 PANTHER BHLH TRANSCRIPTION FACTOR 106 421 - -
Apr2g2620 426 PANTHER BHLH TRANSCRIPTION FACTOR 49 96 - -
Apr2g2620 426 Gene3D - 230 302 IPR036638 GO:0046983
Apr2g2620 426 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 57 94 IPR036638 GO:0046983
Apr2g2620 426 SMART finulus 243 292 IPR011598 GO:0046983
Apr2g2620 426 SMART finulus 69 103 IPR011598 GO:0046983
Apr2g2620 426 Gene3D - 54 125 IPR036638 GO:0046983
Apr2g2620 426 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 49 96 - -
Apr2g2620 426 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 106 421 - -
Apr2g2620 426 Coils Coil 276 303 - -
Apr2g2620 426 Pfam Helix-loop-helix DNA-binding domain 242 287 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2620 Apr-Chr2 30078862 30086683 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2620 54 95 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 54.348 7.74e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr2g2620 HLH 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2620 - - aprc:113856039 793.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2620 2 30078862 30086683 Apr2g2620 2 30078862 30086683 PCT