Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2618 ATGTGGAGTTCGAGCACAGCGATAACAGTAGCACCAGCAGGCTCCTCAGAAGAGGAGCACACTGAATGGTCTTCCTCTTCCTTCTTCAAATTCTCTTCTGGAAACCCTAGAATCGAAGAGACACGTGGCCTCATGCATCTCTTCCCCGACGACACTCCTTCTCCTCTTCCCGTTGGACGCAAACCTCTCGTCTGCGTTGTCGGCGTACCCAATCACATGACCTATGCCGATTTCTGCCAATTCTGTGGTTCATTCATTCAGCACATGCTCGAGATGCGCATCGTTAGGATGGATGGGATGGAGGATCAGTACAGTGTCTTAATTCGGTTCGATGACCAAGACTCCACCGACAGCTTCTACAAGCACTACAATGGCCGTCTTTTCTCATCTCTCGAGGTTGAGGTTTGCCGTGTTCTTTTCACATTAGATGTGCAGTACACTGGCTCCATTGAACATGCACAGCAGCCATCCAATGCTAGTTCTACTGAACAGCCTACCTGTCCTGTGTGCCTTGAGCGGTTAGATCAAGACACCAGTGGAATTCTTACAACCATATGCAATCATTCTTTCCACTGTTCCTGCATTTCAAAATGGGCAGATTCTTCTTGTCCTGTATGCCGCTATTGCCAGCAGCAAGCTGAAAAATCCATATGTTTTGTTTGTCAAACCACTGAAAACCTTTGGATATGCGTTATATGTGGGTTTGTTGGCTGTGGAAGATATAAAGGAGGACATGCTATAATACACTGGAAAGAGACACAGCATTGCTATTCCCTAGAAGTAGAGACCAAACGCGTGTGGGATTATGTGGGAGACAATTATGTTCATAGACTTATTCAGTCCAAAACGGATGGGAAATTAGTTGAGCTTAACTCTCACTGTTCGCACACGGACAGTGGATGTGGAAGTTGCAGCTGTGAAGATAATGGCATGAGCGAGGCTATACTTAATAGTAAAGTTGAAGCTATTGTCAATGAGTACAATGAATTGCTTGCCACTCAACTTGAAAACCAAAAATTATATTTTGAATCCTTACTACAAGAAGTAAAAGAAGAAACTGAAAGAAAAATTTCCAAAGCCGTTCAGAAGGCTGTTAGTCTTAAACAGCAGAAGATTCAGTCCAAGATTGACAGATGTGTCAAAGAGAAAAAGTTTTTGGATGATCTTAATGAGAATCTTGTGAAAAATGAGGAGATTTGGAAAACAAAGGTTCTTGAGATTGAAGAGAGGGAGAAAAAAGCTCTGAGACTGATGGAAGATAGAGTAGCGGACCTAGAAGTGCAGCTTAGCGATCTCATGGTTTGTCTTGAGGGTGGGAAGACAGTAGAACAGCTGCCCGTTTCAAATGAAACTAAAGAAGGGATTCTCTCTGACAATCCAAAAGAATCCTCGTCAACTGGTAGCTCGGAGCTGGGAAGAAAAGCATAA 1428 0.4363 MWSSSTAITVAPAGSSEEEHTEWSSSSFFKFSSGNPRIEETRGLMHLFPDDTPSPLPVGRKPLVCVVGVPNHMTYADFCQFCGSFIQHMLEMRIVRMDGMEDQYSVLIRFDDQDSTDSFYKHYNGRLFSSLEVEVCRVLFTLDVQYTGSIEHAQQPSNASSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTENLWICVICGFVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNSHCSHTDSGCGSCSCEDNGMSEAILNSKVEAIVNEYNELLATQLENQKLYFESLLQEVKEETERKISKAVQKAVSLKQQKIQSKIDRCVKEKKFLDDLNENLVKNEEIWKTKVLEIEEREKKALRLMEDRVADLEVQLSDLMVCLEGGKTVEQLPVSNETKEGILSDNPKESSSTGSSELGRKA* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2618 475 Pfam Ring finger domain 166 207 IPR001841 -
Apr2g2618 475 SUPERFAMILY RING/U-box 183 282 - -
Apr2g2618 475 CDD RING-H2_BRAP2 165 208 - -
Apr2g2618 475 Coils Coil 332 370 - -
Apr2g2618 475 ProSiteProfiles Zinc finger UBP-type profile. 201 294 IPR001607 GO:0008270
Apr2g2618 475 Pfam Zn-finger in ubiquitin-hydrolases and other protein 218 277 IPR001607 GO:0008270
Apr2g2618 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 290 IPR013083 -
Apr2g2618 475 SMART ring_2 167 206 IPR001841 -
Apr2g2618 475 Pfam BRCA1-associated protein 2 57 153 IPR011422 -
Apr2g2618 475 SMART Zf_UBP_1 217 266 IPR001607 GO:0008270
Apr2g2618 475 PANTHER BRCA1-ASSOCIATED PROTEIN 13 467 - -
Apr2g2618 475 Coils Coil 408 428 - -
Apr2g2618 475 MobiDBLite consensus disorder prediction 447 475 - -
Apr2g2618 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 208 IPR013083 -
Apr2g2618 475 ProSiteProfiles Zinc finger RING-type profile. 167 207 IPR001841 -
Apr2g2618 475 CDD RRM_BRAP2_like 64 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2618 Apr-Chr2 30066629 30069747 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2618 163 207 C3H Transcription Factor Family AT1G72220 48.936 2.10e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2618 K10632 - gmx:100794688 845.884