Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2599 ATGGCCGTTATATCTCTCTCTCTGTTCCCTCCCTCTTCTTGTCCTTGCTTCTGCGGCACCATCCATCTTCGCTCTCACAGCAACTTCATTTCCATTCATTCCCCTTCCCCCCTCCCTTTCTCCTCAATTTCAAATCCAAAGCTCTCTCCCTCTCCAAGACGCTTCCACACCGTCTTCGCAGCTTCCTCCGATTATTATTCCACTCTCGGAGTCCCCAAATCTGCCACCGGCAAGGAAATCAAGGCCGCTTATCGAAGATTAGCTCGTCAGTACCATCCTGATGTAAACAAGGAGCCTGGGGCAACTGAAAAGTTCAAAGAGATTAGTGCTGCGTATGAGGTGCTATCAGATGATAAAAAGAGGGCTTTATACGATCAATATGGCGAGGCAGGAGTTAAGAGTACAGTGGGAGGAGCATCAAGTGCCTATACGACAAATCCATTTGATTTATTTGAGACATTTTTTGGGCCAAGTATGGGTGGCTTTGCTGGAATGGATCCAACTGGATTTGGAACGCGCCGACGTAGTACCATTACTAAGGGTGAAGACATCCGGTATGATTTCTCCTTGGAGTTTTCTGAGGCAATTTTTGGAACAGAGAAAGAATTTGAGCTTTCTCATTTAGAAACATGTGAAGTCTGTACTGGTACTGGAGCAAAGATAGGATCCAAGATGAGAGTATGTTCAACTTGTGGTGGTAGGGGTCAGGTGATGAGGACAGAGCAAACACCTTTTGGGCTGTTCTCACAGGTTTCTGTATGTCCAAATTGTGGAGGAGATGGTGAAGTCATATCTGAATATTGTCGTAAATGCAATGGTGAAGGACGGATACGGGTTAAGAAAAATATTAAAGTTAAAGTTCCCCCTGGCGTTAGCTCAGGCAGTATTCTAAGAGTTGCTGGGGAGGGCGATGCAGGACCAAGAGGGGGTCCTCCAGGAGATCTTTATGTGTATCTTGATGTGCAAGAGATACCAGGAATTCAAAGAGATGACATCAATTTGTGCTCTACAATCTCAATCAGTTATCTAGATGCTATATTGGGGACAGTTGTGAAGGTTAAGACAGTTGAAGGTATTTCTGAACTACAAATACCTGCTGGTACCCAACCTGGAGATGTCCTCGTCCTTGCAAGGAAAGGTGTACCAAAATTAAATAAACCATCAATACGTGGTGACCACTTATTTACAGTTAAAGTTACAATACCAAAACGTATTAGTACAAAGGAGCGTGAGTTGCTTGAAGAACTTGCTTCTCTAGGTGACACAGGCAGGCGTTCAAAACCCCGTCCTCGGACTCACTCTTCCAGTGGTACTGAAGGTCCTGTATCTCAAAGGGCTGAAAGTCCAACCGCAACAGTCGAAGAAAAAAATGAAAAATCAGAAGACCAAAATGATATTTGGAATAAATTAAAGGATTTCGCTGGGTCTGTGGCAAATGGAGCTTTAAAGTGGCTGAAAGATCTCTAG 1467 0.4424 MAVISLSLFPPSSCPCFCGTIHLRSHSNFISIHSPSPLPFSSISNPKLSPSPRRFHTVFAASSDYYSTLGVPKSATGKEIKAAYRRLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRALYDQYGEAGVKSTVGGASSAYTTNPFDLFETFFGPSMGGFAGMDPTGFGTRRRSTITKGEDIRYDFSLEFSEAIFGTEKEFELSHLETCEVCTGTGAKIGSKMRVCSTCGGRGQVMRTEQTPFGLFSQVSVCPNCGGDGEVISEYCRKCNGEGRIRVKKNIKVKVPPGVSSGSILRVAGEGDAGPRGGPPGDLYVYLDVQEIPGIQRDDINLCSTISISYLDAILGTVVKVKTVEGISELQIPAGTQPGDVLVLARKGVPKLNKPSIRGDHLFTVKVTIPKRISTKERELLEELASLGDTGRRSKPRPRTHSSSGTEGPVSQRAESPTATVEEKNEKSEDQNDIWNKLKDFAGSVANGALKWLKDL* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2599 488 Pfam DnaJ central domain 211 275 IPR001305 GO:0031072|GO:0051082
Apr2g2599 488 TIGRFAM DnaJ_bact: chaperone protein DnaJ 64 418 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Apr2g2599 488 CDD DnaJ_C 182 405 - -
Apr2g2599 488 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 198 278 IPR036410 -
Apr2g2599 488 Gene3D - 181 317 - -
Apr2g2599 488 PRINTS DnaJ domain signature 66 84 IPR001623 -
Apr2g2599 488 PRINTS DnaJ domain signature 84 99 IPR001623 -
Apr2g2599 488 PRINTS DnaJ domain signature 100 120 IPR001623 -
Apr2g2599 488 PRINTS DnaJ domain signature 120 139 IPR001623 -
Apr2g2599 488 ProSiteProfiles Zinc finger CR-type profile. 198 280 IPR001305 GO:0031072|GO:0051082
Apr2g2599 488 CDD DnaJ_zf 211 275 IPR001305 GO:0031072|GO:0051082
Apr2g2599 488 MobiDBLite consensus disorder prediction 433 450 - -
Apr2g2599 488 SUPERFAMILY HSP40/DnaJ peptide-binding domain 328 413 IPR008971 GO:0006457|GO:0051082
Apr2g2599 488 CDD DnaJ 64 117 IPR001623 -
Apr2g2599 488 Hamap Chaperone protein DnaJ [dnaJ]. 61 473 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Apr2g2599 488 MobiDBLite consensus disorder prediction 451 465 - -
Apr2g2599 488 Gene3D - 327 419 - -
Apr2g2599 488 MobiDBLite consensus disorder prediction 417 465 - -
Apr2g2599 488 ProSitePatterns Nt-dnaJ domain signature. 105 124 IPR018253 -
Apr2g2599 488 Gene3D - 211 275 - -
Apr2g2599 488 Gene3D DnaJ domain 61 166 IPR036869 -
Apr2g2599 488 SMART dnaj_3 63 120 IPR001623 -
Apr2g2599 488 Pfam DnaJ C terminal domain 184 402 IPR002939 -
Apr2g2599 488 SUPERFAMILY HSP40/DnaJ peptide-binding domain 182 322 IPR008971 GO:0006457|GO:0051082
Apr2g2599 488 Pfam DnaJ domain 64 125 IPR001623 -
Apr2g2599 488 ProSiteProfiles dnaJ domain profile. 64 128 IPR001623 -
Apr2g2599 488 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 55 429 - -
Apr2g2599 488 PANTHER MOLECULAR CHAPERONE HSP40/DNAJ FAMILY PROTEIN 55 429 - -
Apr2g2599 488 SUPERFAMILY Chaperone J-domain 60 170 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2599 Apr-Chr2 29951791 29959022 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2599 65 171 C2H2 Transcription Factor Family AT1G74250 37.815 8.31e-11 62.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2599 2 29951791 29959022 Apr2g2599 2 29951791 29959022 ECH