Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2596 ATGGCCTTTTGCCCAATCTTTTGTTGTGGAAATGCTTCGGATCGCAAAACAAGGGGGAAGAAACAACCTCCATGGCGTGTGTTTTCTTTGAAGGAATTACACTCAGCTACAAATAATTTCAACTATGATAACAAGCTCGGCGAAGGGGGTTTCGGCAGTGTGTACTGGGGCCAGCTTTGGGATGGATCGCAAATTGCAGTGAAAAGATTGAAAGTTTGGAGCAACAAAGCAGACATGGAATTTGCTGTTGAAGTTGAGATATTGGCAAGAGTACGACACAAGAATCTTCTTAGTCTACGTGGCTATTGTGCTGAAGGTCAGGAACGGTTAATCGTGTACGATTACATGCCGAATTTGAGCCTGCTCTCTCATCTTCATGGACAGCACTCAGCCGAAAGCCTTCTTGATTGGAACCGACGGATGAATATTGCAATTGGATCTGCTGAGGGAATCGCATATCTTCACCACCAATCAACGCCACACATCATCCACAGAGATATTAAGGCAAGTAACGTGTTGTTGGATTCAGATTTTCAAGCACGGGTTGCTGATTTTGGTTTTGCTAAGTTGATCCCTGATGGAGCAACACATGTGACTACAAGAGTTAAGGGAACCCTTGGCTATCTTGCACCCGAATATGCCATGTTAGGTAAAGCAAATGAGAGTTGCGATGTCTACAGTTTTGGAATTCTCCTTCTAGAACTTGCTAGTGGGAAAAAACCACTTGAAAAACTTAGTTCTGCACTGAAGCGATCAATAAATGATTGGGCACTTCCATTGGCTTGTGAGAAAAAATTTAGTGAACTTGCAGATCCAAGACTTGATGGTAACTATGTCGAAGAAGAGCTCAAAAGGCTTATTTTAGTTGCTCTCGTGTGTGCCCAGAGTCAGCCTGAAAAGAGACCCACCATCCTTGAGGTGGTAGAGTTACTGAAGGGTGAATCCAAAGATAAGTTTGCTCAGCTAGAAAATAATGAACTCTTTCAAAACCCTCCTGCTGTAGGACATGATGATGGGACCTCAGCTGCTGATGCCAGTTCAGATTTAATCTCAGAAGAGAAAGAATCAAAACATGAGTTGGAATAG 1086 0.4309 MAFCPIFCCGNASDRKTRGKKQPPWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKADMEFAVEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGQHSAESLLDWNRRMNIAIGSAEGIAYLHHQSTPHIIHRDIKASNVLLDSDFQARVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKANESCDVYSFGILLLELASGKKPLEKLSSALKRSINDWALPLACEKKFSELADPRLDGNYVEEELKRLILVALVCAQSQPEKRPTILEVVELLKGESKDKFAQLENNELFQNPPAVGHDDGTSAADASSDLISEEKESKHELE* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2596 361 PANTHER BNAA05G14800D PROTEIN 1 359 - -
Apr2g2596 361 SUPERFAMILY Protein kinase-like (PK-like) 21 311 IPR011009 -
Apr2g2596 361 SMART serkin_6 40 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g2596 361 PIRSF ILK 10 324 - -
Apr2g2596 361 Pfam Protein kinase domain 41 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g2596 361 Gene3D Phosphorylase Kinase; domain 1 10 115 - -
Apr2g2596 361 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524
Apr2g2596 361 Gene3D Transferase(Phosphotransferase) domain 1 116 329 - -
Apr2g2596 361 MobiDBLite consensus disorder prediction 322 361 - -
Apr2g2596 361 PANTHER OS01G0750732 PROTEIN 1 359 - -
Apr2g2596 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Apr2g2596 361 ProSiteProfiles Protein kinase domain profile. 40 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g2596 361 CDD STKc_IRAK 46 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2596 Apr-Chr2 29927420 29930349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2596 9 314 Trihelix Transcription Factor Family AT1G70460 50.000 7.92e-96 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Apr2g2596 Pkinase 4.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2596 - - gmx:100788153 689.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2596 2 29927420 29930349 Apr2g2596 2 29927420 29930349 ECH
Apr2g2596 2 29927420 29930349 Apr2g2596 2 29927420 29930349 PCT