Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2562 ATGTCGGGCATCGACACTGCTTATGCTTTTGATCATAATCATAGGCCACATAAAGCAAGCCAACCTGCTTTGCAAGCAATAAAGAACCTTTGTACACAACATGGACAACTTCAACTGCATCATTTCCAACTCTTATGCCGCCTAGGCTGCGGGGATATTGGAAAAGTTTTCCTCTGCAAGATTCACAAATCTTTTAAGCCACACCCCAATTGCTATTTTGCCATGAAAGTAGTGGACAGAAAATCTCTGACTTTGAAAAATAAGCTGAAGAGGGCAAACATGGAGAAGCACGTGTTGAGTATGCTTGACCACCCTTTCTTGCCAACCCTTTATGCAAATTTTAATGCTTATCAATACTCTTGTTTGGTCATGGATTATTGCCCTGGTGGTGACTTGTTTACACTTCAGCAGCATCAGTCAGATCTTCATTTTAGCATCTCCACTGCAAAATTCTTTGCAGCTGAGGTGCTTCTAGCTCTTGAGTATCTCCACATGTTGGGGATAATTTATAGAGACCTCAAGCCAGAAAATGTGCTTATTCAAGAAGATGGCCATATCATGTTATCTGACTTTGATCTCTCTCTTCACTTGGAAGTTCATCCCAAGATTCTAAAATTTGGGCCTCACTATGAGATTGTGAACAAGAGAATAAAGAAGCCAATGTTGTGTTGCAGAAATTCAGATGAATTTGTGAAAAGGGGTATGAAGAAAGCAGCCATTGCAGATAGTGTGATACTGCTACATGCTTCAGAAGGAGCACATGGAGTGGACATGATTGATATGTCAGCTGAGCCCATTAATGGTAGATCACATTCATTTGTTGGGACTCACGAGTATTTGGCACCAGAAGTGATTTTGGCACTGGGCCATGGAAGTGCAGTGGATTGGTGGGCATTTGGTGTGTTTCTTTATGAGCTTTTGTTTGGATTTACACCTTTTAAAGACACAAGCAGTGAGAAAACACTGAACAATATCATAGAGAAGCCATTAACCTTCCCAAGAAGAACAAACACTAGAGACAGAAAAAATCATGGGGAGATTGCGAAGGCACAGGACCTTATTAGGAAGCTGCTCGTGAAAAATCCCATTAAGAGAATGGGATACAACATGGGATCTTGCGAGATAAAAAAACATGAGTTCTTTGAAGGGGTCAACTGGGCCTTAATCAGATCAATTAAAGCTCCTTTTATTCCTAGAACTAGAACTTTACTCGAAAAACAAACCTCATTTACTACCATGCCAAAACTTGGCTCCAAGGACAAAGCAACAATGCAAGGCCCTCATCAATTTGATTTCTTCTAA 1302 0.4063 MSGIDTAYAFDHNHRPHKASQPALQAIKNLCTQHGQLQLHHFQLLCRLGCGDIGKVFLCKIHKSFKPHPNCYFAMKVVDRKSLTLKNKLKRANMEKHVLSMLDHPFLPTLYANFNAYQYSCLVMDYCPGGDLFTLQQHQSDLHFSISTAKFFAAEVLLALEYLHMLGIIYRDLKPENVLIQEDGHIMLSDFDLSLHLEVHPKILKFGPHYEIVNKRIKKPMLCCRNSDEFVKRGMKKAAIADSVILLHASEGAHGVDMIDMSAEPINGRSHSFVGTHEYLAPEVILALGHGSAVDWWAFGVFLYELLFGFTPFKDTSSEKTLNNIIEKPLTFPRRTNTRDRKNHGEIAKAQDLIRKLLVKNPIKRMGYNMGSCEIKKHEFFEGVNWALIRSIKAPFIPRTRTLLEKQTSFTTMPKLGSKDKATMQGPHQFDFF* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2562 433 SUPERFAMILY Protein kinase-like (PK-like) 27 409 IPR011009 -
Apr2g2562 433 PANTHER PROTEIN KINASE PINOID 2 11 433 - -
Apr2g2562 433 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Apr2g2562 433 MobiDBLite consensus disorder prediction 414 433 - -
Apr2g2562 433 PANTHER FLIPPASE KINASE 1-RELATED 11 433 - -
Apr2g2562 433 Gene3D Transferase(Phosphotransferase) domain 1 127 195 - -
Apr2g2562 433 SMART serkin_6 42 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g2562 433 Gene3D Phosphorylase Kinase; domain 1 40 126 - -
Apr2g2562 433 ProSiteProfiles Protein kinase domain profile. 42 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g2562 433 Gene3D Transferase(Phosphotransferase) domain 1 263 399 - -
Apr2g2562 433 Pfam Protein kinase domain 45 201 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g2562 433 Pfam Protein kinase domain 270 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr2g2562 433 ProSiteProfiles AGC-kinase C-terminal domain profile. 382 433 IPR000961 GO:0004674|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2562 Apr-Chr2 29751167 29752826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2562 12 402 AGC Kinase Gene Family AT2G26700 48.630 8.54e-135 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Apr2g2562 Pkinase 2.2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2562 K08286 - nnu:104592366 456.447