Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2544 ATGAGTGGAGGTTCGTTGAGTGGGCTGCGAGAGCATCTGAAGTTGGCAAGAGAATACGCTGTGGAAGGACTGTACGACACTTCTATCATCTTCTTCGACGGCGCTGTTGCTCAGATCAACAAGCACCTAAACAGAGTGGAAGACCCTCTAATTCGTGCTAAATGGATGAACGTGAAGAAAGCACTGTGTGAGGAAACGCAAGTGGTGAAACAGCTCCACGAAGAGAGAAGGGCGTTTAAGGAAACTCGCCATGCTTCCCAATCCCAATGTTCTTCCTCCTTCGTTTTTCAACCGTTGGATGAGTATCCCACTCCCACTAACTACGATCCTGATGTGTGGAGGCCACCCAGTCCCACTCAAGATGCTAGAAGGCCCGCCAGGCCCACTACTCGCAAGGATGGGGCTTGGGCCCGAGGTTCCTCGAGACCCGCCACTGCAACTAGTCGTGGCGCCAAGCCCAGGCCTAACTCTGGGCCCCGACCACCCACCACCGGAAAGAAAGGGAAGTCGAGCAAGGCGGATTCAGTTAGTGGCGAAGAAGGGAAGTCAAAGAAGACGCAATATGAAGGTCCTGATCCAGACTTAGCAGAAATGCTTGAGAGGGATGTGTTAGAAACGTCTCCTGGTGTTAGATGGGATGACGTTGCTGGCCTCACCGAAGCCAAACGACTTCTAGAAGAAGCTGTTGTGCTTCCCTTATGGATGCCTGAATATTTCCAGGGGATTAGGAGACCGTGGAAAGGTGTTCTGATGTTTGGTCCTCCGGGAACTGGGAAGACGCTTCTGGCTAAAGCAGTTGCTACTGAATGTGGTACCACTTTCTTCAATGTTTCTTCAGCTACTTTGGCTTCTAAATGGCGCGGAGAGAGCGAGCGTATGGTTCGCTGTTTGTTTGATCTTGCAAGGGCGTATGCACCTAGTACTATTTTCATTGATGAAATTGATTCTCTTTGCAATGCTAGGGGGGCTTCTGGGGAACATGAATCATCCAGAAGGGTGAAGTCTGAACTTCTAGTTCAGGTTGATGGTGTAAATAATAGTTCCACAAATGAAGACGGTACCCGTAAAATAGTAATGGTTTTGGCAGCCACGAACTTCCCATGGGACATTGATGAGGCACTCAGGAGAAGGCTGGAAAAACGTATATATATTCCTCTGCCCAATTTTGAGAGCCGTAAAGAGCTGATCCGTATCAATTTGAAGACTGTTGAGGTGGCCCCTGATGTGAATATAGATGAAGTGGCTCGCAGGACAGAGGGGTATAGTGGAGATGACTTGACAAATGTCTGTCGTGATGCTTCCCTCAATGGTATGAGGCGTAAGATTGCGGGAAAGACGCGTGATGAGATCAAGAACATGTCAAAGGACGAAATTTCCAAGGATCCTGTTGCAATGTGTGATTTTGAAGAAGCTTTGAAGAAAGTCCAACGAAGTGTTTCTCAGGCTGACATTGAACGCCATGAGAAGTGGTTTGCTGAATTTGGATCAGCATAA 1494 0.4846 MSGGSLSGLREHLKLAREYAVEGLYDTSIIFFDGAVAQINKHLNRVEDPLIRAKWMNVKKALCEETQVVKQLHEERRAFKETRHASQSQCSSSFVFQPLDEYPTPTNYDPDVWRPPSPTQDARRPARPTTRKDGAWARGSSRPATATSRGAKPRPNSGPRPPTTGKKGKSSKADSVSGEEGKSKKTQYEGPDPDLAEMLERDVLETSPGVRWDDVAGLTEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNSSTNEDGTRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAPDVNIDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPVAMCDFEEALKKVQRSVSQADIERHEKWFAEFGSA* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2544 497 MobiDBLite consensus disorder prediction 84 100 - -
Apr2g2544 497 Gene3D - 207 488 IPR027417 -
Apr2g2544 497 Pfam AAA+ lid domain 408 449 IPR041569 -
Apr2g2544 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 494 IPR027417 -
Apr2g2544 497 CDD AAA 243 386 - -
Apr2g2544 497 Pfam Vps4 C terminal oligomerisation domain 450 495 IPR015415 -
Apr2g2544 497 MobiDBLite consensus disorder prediction 80 195 - -
Apr2g2544 497 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 5 497 - -
Apr2g2544 497 ProSitePatterns AAA-protein family signature. 358 377 IPR003960 GO:0005524|GO:0016887
Apr2g2544 497 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 7 497 IPR028596 GO:0008017|GO:0008568|GO:0051013
Apr2g2544 497 SMART AAA_5 245 388 IPR003593 -
Apr2g2544 497 Gene3D - 387 473 - -
Apr2g2544 497 Pfam ATPase family associated with various cellular activities (AAA) 249 386 IPR003959 GO:0005524|GO:0016887
Apr2g2544 497 Gene3D - 4 80 - -
Apr2g2544 497 MobiDBLite consensus disorder prediction 172 195 - -
Apr2g2544 497 PANTHER AAA DOMAIN-CONTAINING 5 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2544 Apr-Chr2 29625056 29628045 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2544 201 489 Calmodulin-binding Proteins AT3G56690 39.933 2.05e-51 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2544 K07767 - zju:112489859 829.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2544 2 29625056 29628045 Apr2g2544 2 29625056 29628045 ECH
Apr2g2544 2 29625056 29628045 Apr2g2544 2 29625056 29628045 PCT