Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2541 ATGTCGTCAAAAAGTGGCATCCACTTATCGGAATCTGACGCCGTTGATTGTAACTTGAAGGAGACTGAGCTCACGCTGGGACTTCCTGGCACCAAAACTGGCACAAAACGTGCTTTCTCCGACCCCGTTGAGCTTCATCTTGGAACCTCAAGGAGTGCTTCTGAAAATTCAGCGAATAAAATGTCCACATCCAAATTCCCTACACCCAAGCAACAAGTGGTGGGGTGGCCGCCGGTGAGGGCGAGCAGAAAGAATATTGTGATGAAGAGTTGCAAGTACGTTAAGGTGGCGGTGGATGGAGCTCCATATCTAAGAAAAGTGGATCTTGAAATGTATGAGAGTTATGAACATTTGATGAGGGAATTAGAGACCATGTTTTCTGGCTTGACCATTCGTAATCATTTGATGAATGAGAGGAAACTCATGGACTCTGGAAATGGAATTGAGTACATGCCCACCTATGAGGACAAGGATGGTGACTGGATGTTGGTTGGGGATGTACCGTGGAAGATGTTCGTTGAATCATGCAAGAGGATAAGGCTTATGATTAGCTCAGAGGCCAATGGCTTAGGTCCGAGGACAGCTTCCAAATGTACGGGTTCCATTTAG 609 0.4631 MSSKSGIHLSESDAVDCNLKETELTLGLPGTKTGTKRAFSDPVELHLGTSRSASENSANKMSTSKFPTPKQQVVGWPPVRASRKNIVMKSCKYVKVAVDGAPYLRKVDLEMYESYEHLMRELETMFSGLTIRNHLMNERKLMDSGNGIEYMPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMISSEANGLGPRTASKCTGSI* 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2541 202 ProSiteProfiles PB1 domain profile. 91 188 IPR000270 GO:0005515
Apr2g2541 202 PANTHER AUXIN-RESPONSIVE PROTEIN IAA15 10 187 - -
Apr2g2541 202 MobiDBLite consensus disorder prediction 48 70 - -
Apr2g2541 202 Gene3D - 86 196 - -
Apr2g2541 202 MobiDBLite consensus disorder prediction 48 73 - -
Apr2g2541 202 Pfam AUX/IAA family 25 193 IPR033389 -
Apr2g2541 202 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 187 IPR003311 GO:0005634|GO:0006355
Apr2g2541 202 SUPERFAMILY CAD & PB1 domains 82 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2541 Apr-Chr2 29609292 29611109 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2541 78 196 B3 DNA Binding Superfamily AT5G62000 31.092 1.40e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Apr2g2541 AUX_IAA 2.4e-47 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2541 K14484 - gmx:100500488 284.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2541 2 29609292 29611109 Apr2g2541 2 29609292 29611109 ECH