Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2540 ATGGAGAAAGAAGGTCTTGGACTTGAAATCACGGAGTTAAGGTTGGGACTTCCCGGTGGTGAACCCATATCATGTGTAGGGGACAAGAACGAGAAGAAGAGGGTGTTCTCGGAGATTGACGTTGATGGCGATGAAAACAGCTCCTCCGGTGACCGGAAAATGCAAACCAAGAATCAAGTGGTGGGGTGGCCTCCGGTGTGTTCCTACCGGAAGAAGAACAGCATGAATGAAGCCACAAAAATGTACGTCAAAGTTAGCATGGACGGAGCTCCATTTTTGCGTAAAATTGATTTAGCCATGCATAAGGGATACTCCGAGTTGGCCTTCGCTTTGGAGAAGTTCTTTGGTTGCTATGGAATAGGCGAGGCGTTGAAGGATGCGGACAATTCTGAACACGTTCCCATCTACGAGGACAAAGACGGTGACTGGATGCTGGTTGGAGATGTCCCTTGGGAGATGTTTATTGAGTCGTGCAAGAGGTTGAGGATTATGAAGAGATCAGATGCAAAAGGCTTCGGACTGCAACCAAAAGGGTCTTTAAAGGGATTCATAGAAGGCGTGACAAAGTGA 570 0.4754 MEKEGLGLEITELRLGLPGGEPISCVGDKNEKKRVFSEIDVDGDENSSSGDRKMQTKNQVVGWPPVCSYRKKNSMNEATKMYVKVSMDGAPFLRKIDLAMHKGYSELAFALEKFFGCYGIGEALKDADNSEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFGLQPKGSLKGFIEGVTK* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2540 189 ProSiteProfiles PB1 domain profile. 80 168 IPR000270 GO:0005515
Apr2g2540 189 Pfam AUX/IAA family 46 172 IPR033389 -
Apr2g2540 189 Gene3D - 74 177 - -
Apr2g2540 189 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 172 IPR003311 GO:0005634|GO:0006355
Apr2g2540 189 SUPERFAMILY CAD & PB1 domains 73 165 - -
Apr2g2540 189 PANTHER AUXIN-RESPONSIVE PROTEIN IAA6 4 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2540 Apr-Chr2 29596287 29600304 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2540 72 170 B3 DNA Binding Superfamily AT4G23980 36.364 2.97e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Apr2g2540 AUX_IAA 2.1e-46 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2540 K14484 - gmx:100811879 317.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2540 2 29596287 29600304 Apr2g2540 2 29596287 29600304 ECH
Apr2g2540 2 29596287 29600304 Apr2g2540 2 29596287 29600304 PCT