Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2539 ATGGATGTTACTTCTCTGGGTTCAAATAGCAACACCCAAACCGATCAACATCCTTTGCTGATGGAGCAGACGGAAACCCGTAATGGCCATCAGCATATAATTGACATTACAAGGAATGGTGAAGCTTTAACCACATCATCTCATAATGATCAACACCCTGAAATGCATTTACAGCAGAATGAAGATCAACCAACTGGGGAGACACAAGACTCCACTCATCAAAATTCATCTTCTACATCCAGATTAAACTCTAGAAATTCCACCTCATTGAGAAGAGGTGATGGATATGGTCATCGCAGAAGGAGTCCATTAAATTCTGGACTTTGGATTTCTGTTGAGCTTGTAGTCACTGTGAGTCAGATCATAGCATCTATCGTGGTTTTGTCATTGTCCAGGAATGAAAATCCCCAAGCCCCATTATTTGCCTGGATTGTGGGTTATGCATCTGGTTGTGTTGCCACACTTCCTATTCTTTACTGGCGTTTTCGAAACCGTAATCAAAGCACTGAACAAGATATGTCTCAACCATCTCAAGGATCTTCTGGAAGCAATCCTCCAGATCGTACTTATACTGCCATTTATGTTTCACATGTCTCGGATGAGGAGAATGGTCATGCTGCCCAATCAGCCGCAAGAAACACTATAATTCCTGGAGCCTTTACTTCTAGGTTTAATGGATTAGTAGACCATTTCAAGATGGCCTTGGATTGCTTCTTTGCAGTTTGGTTTGTGGTAGGAAATGTTTGGATCTTTGGAGGTCACACTTCTCCTTCTGATGCTCCACAATTGTATAGATTATGTATTGTGTTTCTTACCTTTAGCTGCATTGGATATGCTATGCCATTTATACTTTGTGCAACCATATGTTGCTGCCTGCCTTGCATAATTTCTGTTTTGGGCATTCGAGAGGATTTTTCTCAAAATAGAGGAGCAACTGTAGAATCAATTAACGCTCTACCAATCTACAAGTTCAAGTTGAAGAACAATGAAATGGGTGATGATCAGGATGTCAATGCTGCTATAGATGATGGTGGGATTTTGGCTGCAGGAACAGAAAAAGAGAGGGTGATTTCAGGAGAAGATGCTGTTTGTTGCATTTGCTTAGCAAAATATGCAGATGATGAGGAGCTTAGGGAATTGCCTTGCTTTCACGTTTTTCACGTAGCATGTGTTGACAAATGGTTGAAGATAAATGCATCCTGCCCTCTTTGTAAAAGTGAAGTTGGTCCGAGTAATGGAGGGTCACCTTCAGCCTGGGACTCCAGTCCTCATTAG 1275 0.4157 MDVTSLGSNSNTQTDQHPLLMEQTETRNGHQHIIDITRNGEALTTSSHNDQHPEMHLQQNEDQPTGETQDSTHQNSSSTSRLNSRNSTSLRRGDGYGHRRRSPLNSGLWISVELVVTVSQIIASIVVLSLSRNENPQAPLFAWIVGYASGCVATLPILYWRFRNRNQSTEQDMSQPSQGSSGSNPPDRTYTAIYVSHVSDEENGHAAQSAARNTIIPGAFTSRFNGLVDHFKMALDCFFAVWFVVGNVWIFGGHTSPSDAPQLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQNRGATVESINALPIYKFKLKNNEMGDDQDVNAAIDDGGILAAGTEKERVISGEDAVCCICLAKYADDEELRELPCFHVFHVACVDKWLKINASCPLCKSEVGPSNGGSPSAWDSSPH* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2539 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 347 413 IPR013083 -
Apr2g2539 424 ProSiteProfiles Zinc finger RING-type profile. 364 405 IPR001841 -
Apr2g2539 424 PANTHER PROTEIN, PUTATIVE-RELATED 1 420 - -
Apr2g2539 424 Pfam Ring finger domain 364 405 IPR001841 -
Apr2g2539 424 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 420 - -
Apr2g2539 424 MobiDBLite consensus disorder prediction 43 91 - -
Apr2g2539 424 CDD RING-H2_RNF111_like 363 405 - -
Apr2g2539 424 SMART ringv_2 363 405 IPR011016 GO:0008270
Apr2g2539 424 SUPERFAMILY RING/U-box 356 411 - -
Apr2g2539 424 MobiDBLite consensus disorder prediction 43 102 - -
Apr2g2539 424 SMART ring_2 364 404 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2539 Apr-Chr2 29583350 29586321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2539 1 415 C3H Transcription Factor Family AT1G80400 58.195 8.69e-173 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2539 - - gmx:100819516 768.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr2g2539 2 29583350 29586321 Apr2g2539 2 29583350 29586321 ECH