Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr2g2501 ATGACAGAACCATTTTTGCTCCTTAAAAAACACACCCTTTCATCAACACAACAAATGTTGCCAATGGGTGCGGACATGTCCAACAATCCATCTCCCACTTCTCACCCCAAAGACTTCTTTGCCTCCCCAGCTCTCTCTCTTAGCCTCGCTGGGATTTTTCGCCATGCTGGGGTGGCGTCAGAGGCTGAAGCTGCCACTTGTAACATGGAGGTGGAGGAGGGGGAAGAGGGAAGTGGTGGAGGTGAGAGGTTGGAGGAGATTAGCAGCGAGAACTCCGGTCCCGCGAGATCCAGATCAGAGGATGATTTTGAAGGAGAAGGTGAGCAGGATGATGATGATGGTGATGGAGACAAGACCAAGAAGAAGAAGAGGAAGAAGTATCACAGGCACACTGCTCAGCAGATCAGAGAAATGGAAGCGCTTTTCAAAGAATCACCCCATCCTGATGAAAAGCAGAGGCAACAACTTAGCAAGCAGTTAGGCCTTGCCCCAAGGCAAGTCAAGTTTTGGTTCCAAAACCGTCGAACCCAAATCAAGGCAATACAAGAGCGTCATGAAAACTCTTTATTGAAAACAGAAATAGAGAAATTAAAGGAGAAAAATAAGACCTTACGAGAGACCATAAACAAAGCTTGTTGCCCCAACTGTGGGGTGGCCACCACACCAAGAGATGGCACCATGCCAACTGAAGAACAACAACTACGTATTGAAAATGCCAAACTAAGAGCTGAGGTAGAGAAGCTTAGAGCAGCTATAGGAAAATACGCACCAGGGACAGCGTCTCCTTCATGTTCTTCGGGCCATGATCAAGAGAATAGAAGCTCTTTGGATTTTTACACTGGAATTTTTGGACTTGATAAATCAAGGATAATGGACATAGTAAACCAAGCAATGGAGGAGCTCATTAAGATGGCTACCATGGGAGAACCATTATGGCTTCGTAGCTTTGAGACTGGTCGCGAAATACTTAACTATGATGAGTATATGAAGGAGTTTGCAGTTGAAAATGCAAACAATGAAAGGCCAAAGAGATCCATCGAAGCTTCAAGAGAGACGGGGGTTGTTTTTGTCGATCTCCCTCGTCTTGTCCAAAGTTTTCTAGATGCGAATCAATGGAAGGAAATGTTTCCTTGTTTGATATCTAAGGCGGCAATGGTTGATGTTATATGCAATGGAGAAGGTTCTAACAGGAATGGTGCAGTGCAACTGATGTTTGCGGAGCTGCAAATGCTCACTCCAATGGTGCCCACAAGAGAAGTTTATTTTGTCCGTTATTGCAAACAATTGAGTGCTGAACAGTGGGCAATCGTTGATATATCCATAGACAAAGTAGAAGACAACATTGACGCGTCCCTCGTGAAATGTAGAAAACGCCCATCCGGTTGCATTATTGAGGACAAGTCAAATGGCCATTGCAAAGTAATCTGGGTGGAGCACTTGGAATGTCAAAAGAGTGCAGTCCATTCAATGTATCGCACTATTGTCAACAGTGGCCTAGCTTTTGGGGCAAGGCATTGGATTGCGACACTGCAACTTCAATGTGAACGTCTAGTTTTTTTCATGGCAACAAATGTTCCCATGAAGGACTCAACTGGTGTTGCCACATTAGCTGGGAGAAAAAGCATTTTAAAGTTGGCTCAAAGAATGACATGGAGTTTCTGCCATGCAATTGGTGCGTCAAGTTTTCATACATGGACTAAGGTTACAAGTAAAACTGGGGAAGACATAAGGATCAGTTCTAGAAAAAACTTGAACGATCCTGGTGAACCTCTTGGGTTGATATTGTGTGCAGTTTCTTCTGTATGGTTGCCTGTCTCGCCTAATGTTCTGTTTGATTTCTTGAGGGACGAAGCACGTCGAACTGAGTGGGATATCATGTCCAGTGGTGGGGCAGTGCAGTGCATTGCAAATTTAGCCAAGGGACAAGACCGAGGCAATGCTGTAACTATCCAAACTATTAAATCGAAAGAAAACAGTCTGTGGATACTGCAAGATAGCTGCACAAATTCTTATGAGTCAATGGTGGTATATGCTTCTGTGGACATTACTGGTATTCAGTCTGTGATGACAGGATGTGATTCAAGCAATCTTGCGATACTTCCCTCAGGATTCTCTATTATTCCTGATGGCCTTGAATCTAGGCCATTGGTGATTACATCAAGGCAAGAAGAAAAAAATACAGAGGGAGGATCTTTATTTACAATGGCATTCCAGATCCTTACCAATGCTTCTCCCACAGCCAAGTTAACTATGGAGTCTGTGGACTCAGTCAACACTCTTGTATCTTGTACATTGAGAAATATCAGAACGAGTTTACAATGTGAAGATGGTTAG 2334 0.4387 MTEPFLLLKKHTLSSTQQMLPMGADMSNNPSPTSHPKDFFASPALSLSLAGIFRHAGVASEAEAATCNMEVEEGEEGSGGGERLEEISSENSGPARSRSEDDFEGEGEQDDDDGDGDKTKKKKRKKYHRHTAQQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKTEIEKLKEKNKTLRETINKACCPNCGVATTPRDGTMPTEEQQLRIENAKLRAEVEKLRAAIGKYAPGTASPSCSSGHDQENRSSLDFYTGIFGLDKSRIMDIVNQAMEELIKMATMGEPLWLRSFETGREILNYDEYMKEFAVENANNERPKRSIEASRETGVVFVDLPRLVQSFLDANQWKEMFPCLISKAAMVDVICNGEGSNRNGAVQLMFAELQMLTPMVPTREVYFVRYCKQLSAEQWAIVDISIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSAVHSMYRTIVNSGLAFGARHWIATLQLQCERLVFFMATNVPMKDSTGVATLAGRKSILKLAQRMTWSFCHAIGASSFHTWTKVTSKTGEDIRISSRKNLNDPGEPLGLILCAVSSVWLPVSPNVLFDFLRDEARRTEWDIMSSGGAVQCIANLAKGQDRGNAVTIQTIKSKENSLWILQDSCTNSYESMVVYASVDITGIQSVMTGCDSSNLAILPSGFSIIPDGLESRPLVITSRQEEKNTEGGSLFTMAFQILTNASPTAKLTMESVDSVNTLVSCTLRNIRTSLQCEDG* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr2g2501 777 CDD homeodomain 128 179 IPR001356 GO:0003677
Apr2g2501 777 SMART HOX_1 123 185 IPR001356 GO:0003677
Apr2g2501 777 MobiDBLite consensus disorder prediction 20 36 - -
Apr2g2501 777 ProSitePatterns 'Homeobox' domain signature. 156 179 IPR017970 GO:0000981|GO:0006355
Apr2g2501 777 Gene3D - 330 511 IPR023393 -
Apr2g2501 777 SMART START_1 292 516 IPR002913 GO:0008289
Apr2g2501 777 MobiDBLite consensus disorder prediction 69 133 - -
Apr2g2501 777 Gene3D - 110 194 - -
Apr2g2501 777 Coils Coil 231 251 - -
Apr2g2501 777 ProSiteProfiles START domain profile. 283 519 IPR002913 GO:0008289
Apr2g2501 777 MobiDBLite consensus disorder prediction 20 39 - -
Apr2g2501 777 Pfam Homeodomain 124 179 IPR001356 GO:0003677
Apr2g2501 777 SUPERFAMILY Homeodomain-like 113 182 IPR009057 -
Apr2g2501 777 SUPERFAMILY Bet v1-like 285 516 - -
Apr2g2501 777 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 39 774 - -
Apr2g2501 777 Coils Coil 180 210 - -
Apr2g2501 777 CDD START_ArGLABRA2_like 287 515 - -
Apr2g2501 777 ProSiteProfiles 'Homeobox' domain profile. 121 181 IPR001356 GO:0003677
Apr2g2501 777 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 39 774 IPR042160 -
Apr2g2501 777 Pfam START domain 294 516 IPR002913 GO:0008289
Apr2g2501 777 SUPERFAMILY Bet v1-like 546 762 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr2g2501 Apr-Chr2 29361570 29367615 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr2g2501 87 776 Homeobox Transcription Factor Family AT1G79840 66.809 0.0 939
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr2g2501 START 1.4e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr2g2501 K09338 - gmx:100809926 1318.52